miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14604 5' -58.2 NC_003521.1 + 217465 1.05 0.00387
Target:  5'- gAAGGCCAGCACCAUGCCCAGACACAGc -3'
miRNA:   3'- -UUCCGGUCGUGGUACGGGUCUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 138238 0.84 0.113331
Target:  5'- -uGGCCAGCGCCA-GCCCcgAGACGCAGu -3'
miRNA:   3'- uuCCGGUCGUGGUaCGGG--UCUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 101988 0.81 0.16153
Target:  5'- cAGGCggugCAGCugCGUGUCCAGGCACAGg -3'
miRNA:   3'- uUCCG----GUCGugGUACGGGUCUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 218461 0.79 0.227437
Target:  5'- -uGGCCGGCACCAcGCCgUGGGCGCAGu -3'
miRNA:   3'- uuCCGGUCGUGGUaCGG-GUCUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 34999 0.77 0.307733
Target:  5'- cGGGGCCAGCGagcgcuugcgUCGUGCCCggcGGACGCGGu -3'
miRNA:   3'- -UUCCGGUCGU----------GGUACGGG---UCUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 163206 0.77 0.307733
Target:  5'- -cGGCCGGCGCCGUcacgggcgcGCCCGGugACGu -3'
miRNA:   3'- uuCCGGUCGUGGUA---------CGGGUCugUGUc -5'
14604 5' -58.2 NC_003521.1 + 69866 0.76 0.314028
Target:  5'- uGAGGCCgccgcgcAGCGCCAcGCCCAGGcCAUAGa -3'
miRNA:   3'- -UUCCGG-------UCGUGGUaCGGGUCU-GUGUC- -5'
14604 5' -58.2 NC_003521.1 + 32092 0.76 0.329092
Target:  5'- -cGGCCAGCGCCAUGCgUuuggcGGCGCGGc -3'
miRNA:   3'- uuCCGGUCGUGGUACGgGu----CUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 147706 0.75 0.359243
Target:  5'- -cGGCCAGCACCAUGugaCCCGuGCGCAc -3'
miRNA:   3'- uuCCGGUCGUGGUAC---GGGUcUGUGUc -5'
14604 5' -58.2 NC_003521.1 + 162961 0.75 0.375026
Target:  5'- cGAGGCCGGCGCCAUcGCCCGucuGGC-CAa -3'
miRNA:   3'- -UUCCGGUCGUGGUA-CGGGU---CUGuGUc -5'
14604 5' -58.2 NC_003521.1 + 44528 0.75 0.391272
Target:  5'- -uGGCCAGCAUCAagcgGCCCGGcACGCGc -3'
miRNA:   3'- uuCCGGUCGUGGUa---CGGGUC-UGUGUc -5'
14604 5' -58.2 NC_003521.1 + 8412 0.74 0.407969
Target:  5'- cAGGcGCUGGCguuGCCGUGCCgCAGGCGCAGc -3'
miRNA:   3'- -UUC-CGGUCG---UGGUACGG-GUCUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 137212 0.73 0.494828
Target:  5'- gAGGGCCAguacaGCACCGUGCCCAccguggaggaguacGuGCGCAGc -3'
miRNA:   3'- -UUCCGGU-----CGUGGUACGGGU--------------C-UGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 146981 0.73 0.50143
Target:  5'- gGAGGaacgagauucgucacCUAGUGCCGUGCCCGGAcCACGGu -3'
miRNA:   3'- -UUCC---------------GGUCGUGGUACGGGUCU-GUGUC- -5'
14604 5' -58.2 NC_003521.1 + 196053 0.72 0.526276
Target:  5'- uAGGGCCAGCACCGgccGCCUuc-CGCGGu -3'
miRNA:   3'- -UUCCGGUCGUGGUa--CGGGucuGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 88677 0.72 0.535956
Target:  5'- uGGGCCGGCgGCCcgGCUCGGGgACAa -3'
miRNA:   3'- uUCCGGUCG-UGGuaCGGGUCUgUGUc -5'
14604 5' -58.2 NC_003521.1 + 31800 0.72 0.539846
Target:  5'- gAAGGCCgaguagaggcguuugAGCGCCGUcucgGCCCGGGCGCc- -3'
miRNA:   3'- -UUCCGG---------------UCGUGGUA----CGGGUCUGUGuc -5'
14604 5' -58.2 NC_003521.1 + 166638 0.72 0.545699
Target:  5'- cGGGCCGcGCGCCggGCgCCGcGGCGCAGc -3'
miRNA:   3'- uUCCGGU-CGUGGuaCG-GGU-CUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 100948 0.72 0.549611
Target:  5'- cGGGUUcguaguccagacagaAGCGCCGUGCCCGGcgcGCACGGc -3'
miRNA:   3'- uUCCGG---------------UCGUGGUACGGGUC---UGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 217731 0.72 0.555497
Target:  5'- -cGGCCcccCGCCcgGCCaCGGACGCAGa -3'
miRNA:   3'- uuCCGGuc-GUGGuaCGG-GUCUGUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.