miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14604 5' -58.2 NC_003521.1 + 2211 0.67 0.84068
Target:  5'- -cGGCCGGCcCUAcGCCCAGGCc--- -3'
miRNA:   3'- uuCCGGUCGuGGUaCGGGUCUGuguc -5'
14604 5' -58.2 NC_003521.1 + 3421 0.68 0.762413
Target:  5'- uGGGGCCAcucagaccccCGCCAUGCCgacgccgaGGGCACAGg -3'
miRNA:   3'- -UUCCGGUc---------GUGGUACGGg-------UCUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 5704 0.68 0.784414
Target:  5'- cGGGcGCCGuCACCGggguuauguguacgGCCCGGGCACGGc -3'
miRNA:   3'- -UUC-CGGUcGUGGUa-------------CGGGUCUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 8008 0.69 0.685138
Target:  5'- cGGGgCAGCGCCGUaGCuCCAGACcgcCGGa -3'
miRNA:   3'- uUCCgGUCGUGGUA-CG-GGUCUGu--GUC- -5'
14604 5' -58.2 NC_003521.1 + 8412 0.74 0.407969
Target:  5'- cAGGcGCUGGCguuGCCGUGCCgCAGGCGCAGc -3'
miRNA:   3'- -UUC-CGGUCG---UGGUACGG-GUCUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 12745 0.68 0.786214
Target:  5'- -cGG-CAGUACCAaccauugucguugGCCCAGACGCAc -3'
miRNA:   3'- uuCCgGUCGUGGUa------------CGGGUCUGUGUc -5'
14604 5' -58.2 NC_003521.1 + 15758 0.66 0.878162
Target:  5'- -cGGgCAGCAgCAUGCCCgAGcuACGCGa -3'
miRNA:   3'- uuCCgGUCGUgGUACGGG-UC--UGUGUc -5'
14604 5' -58.2 NC_003521.1 + 17170 0.66 0.878162
Target:  5'- cGAGGCgCAGCGCUGgcaGCUgggCAGGCGCAu -3'
miRNA:   3'- -UUCCG-GUCGUGGUa--CGG---GUCUGUGUc -5'
14604 5' -58.2 NC_003521.1 + 17365 0.66 0.848566
Target:  5'- --cGCCGGCGCgGcgGCCCAGACuCGa -3'
miRNA:   3'- uucCGGUCGUGgUa-CGGGUCUGuGUc -5'
14604 5' -58.2 NC_003521.1 + 23553 0.67 0.798668
Target:  5'- -uGGCCAGCGCCugcuccucGUCCgucauggugguGGGCGCGGg -3'
miRNA:   3'- uuCCGGUCGUGGua------CGGG-----------UCUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 24396 0.69 0.704879
Target:  5'- --aGCCGGCGCCggGCCCgcGGAgCAUAGa -3'
miRNA:   3'- uucCGGUCGUGGuaCGGG--UCU-GUGUC- -5'
14604 5' -58.2 NC_003521.1 + 26911 0.68 0.780796
Target:  5'- -uGGUC-GCACCGcGCuCCAGACACGc -3'
miRNA:   3'- uuCCGGuCGUGGUaCG-GGUCUGUGUc -5'
14604 5' -58.2 NC_003521.1 + 27007 0.68 0.780796
Target:  5'- cGGGCCacGGCAUCGaaaccgagGCuCCAGGCGCGGc -3'
miRNA:   3'- uUCCGG--UCGUGGUa-------CG-GGUCUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 27806 0.66 0.871066
Target:  5'- -cGGCCGGCucGCCcgGCgCCAuGGUACAGa -3'
miRNA:   3'- uuCCGGUCG--UGGuaCG-GGU-CUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 28156 0.67 0.807391
Target:  5'- -cGG-CGGCgACCAUGCCCGcGACGCc- -3'
miRNA:   3'- uuCCgGUCG-UGGUACGGGU-CUGUGuc -5'
14604 5' -58.2 NC_003521.1 + 30246 0.66 0.848566
Target:  5'- cAGGUCcGCGCgGuUGCCguGGCGCAGc -3'
miRNA:   3'- uUCCGGuCGUGgU-ACGGguCUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 31800 0.72 0.539846
Target:  5'- gAAGGCCgaguagaggcguuugAGCGCCGUcucgGCCCGGGCGCc- -3'
miRNA:   3'- -UUCCGG---------------UCGUGGUA----CGGGUCUGUGuc -5'
14604 5' -58.2 NC_003521.1 + 32092 0.76 0.329092
Target:  5'- -cGGCCAGCGCCAUGCgUuuggcGGCGCGGc -3'
miRNA:   3'- uuCCGGUCGUGGUACGgGu----CUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 33020 0.67 0.807391
Target:  5'- -cGGCCAGCuugaccagcGCCGUGCCaUAGA-GCAGc -3'
miRNA:   3'- uuCCGGUCG---------UGGUACGG-GUCUgUGUC- -5'
14604 5' -58.2 NC_003521.1 + 33208 0.7 0.664228
Target:  5'- cAGGCCGGCgaGCC--GCCCAGACggaucuuGCAGc -3'
miRNA:   3'- uUCCGGUCG--UGGuaCGGGUCUG-------UGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.