miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14605 3' -55.9 NC_003521.1 + 36770 0.68 0.912521
Target:  5'- -aGGACgCGCGUggccugGCGGGCguGGAGGa -3'
miRNA:   3'- caUCUGgGCGCA------CGUCUGguCCUUCg -5'
14605 3' -55.9 NC_003521.1 + 36834 0.68 0.912521
Target:  5'- -cGGGCCgGCGcUGCuGuGCCGGGuaGAGCa -3'
miRNA:   3'- caUCUGGgCGC-ACGuC-UGGUCC--UUCG- -5'
14605 3' -55.9 NC_003521.1 + 37409 0.66 0.947417
Target:  5'- -cGGGCCU-UGUGCGacGGCCuGGGAGGCg -3'
miRNA:   3'- caUCUGGGcGCACGU--CUGG-UCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 37459 0.71 0.775918
Target:  5'- uGUGGGCUCGCGcGCGGGCCAccguGGugccGCa -3'
miRNA:   3'- -CAUCUGGGCGCaCGUCUGGU----CCuu--CG- -5'
14605 3' -55.9 NC_003521.1 + 37704 0.68 0.90052
Target:  5'- --cGGCUCGCagaGUGCcuuuGGCCAGGcGGCg -3'
miRNA:   3'- cauCUGGGCG---CACGu---CUGGUCCuUCG- -5'
14605 3' -55.9 NC_003521.1 + 38260 0.67 0.933818
Target:  5'- --cGGCCCaGgGUcaGCAGccCCAGGAGGCc -3'
miRNA:   3'- cauCUGGG-CgCA--CGUCu-GGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 43425 0.67 0.928834
Target:  5'- -----aCUGCGUGCccGACgAGGAGGCg -3'
miRNA:   3'- caucugGGCGCACGu-CUGgUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 44056 0.69 0.86672
Target:  5'- ---cGCCCGCGgucgcGCcGGCCGGGGcAGCa -3'
miRNA:   3'- caucUGGGCGCa----CGuCUGGUCCU-UCG- -5'
14605 3' -55.9 NC_003521.1 + 45734 0.66 0.962471
Target:  5'- -gGGACgCGgGU-CAGGCCGGGuuuuguAGCg -3'
miRNA:   3'- caUCUGgGCgCAcGUCUGGUCCu-----UCG- -5'
14605 3' -55.9 NC_003521.1 + 46397 0.75 0.571115
Target:  5'- -gGGugCgugggGCGcGCGGGCCAGGAAGCg -3'
miRNA:   3'- caUCugGg----CGCaCGUCUGGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 48685 0.72 0.726265
Target:  5'- cGUGGAUCCGCGgacGCcgacggagccgacgAGGCCGGGAgaGGUg -3'
miRNA:   3'- -CAUCUGGGCGCa--CG--------------UCUGGUCCU--UCG- -5'
14605 3' -55.9 NC_003521.1 + 49348 0.69 0.880873
Target:  5'- cGUcuGCgCGUGUGguGGCCgggugAGGAAGCg -3'
miRNA:   3'- -CAucUGgGCGCACguCUGG-----UCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 49819 0.66 0.958672
Target:  5'- cUGGGCgCCGUgcagugcgccGUGCAGAcggccguCCAGGuGGCg -3'
miRNA:   3'- cAUCUG-GGCG----------CACGUCU-------GGUCCuUCG- -5'
14605 3' -55.9 NC_003521.1 + 51543 0.67 0.938576
Target:  5'- aGUGGGUCCGCaucuUGguGGCUcGGAGGCg -3'
miRNA:   3'- -CAUCUGGGCGc---ACguCUGGuCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 54173 0.66 0.947417
Target:  5'- -gGGGCCCcUGUGUcaACCGGaGGAGCa -3'
miRNA:   3'- caUCUGGGcGCACGucUGGUC-CUUCG- -5'
14605 3' -55.9 NC_003521.1 + 54502 0.71 0.793832
Target:  5'- cGgcGGCCCgGCGU--GGACCAGGAucuGCa -3'
miRNA:   3'- -CauCUGGG-CGCAcgUCUGGUCCUu--CG- -5'
14605 3' -55.9 NC_003521.1 + 60690 0.7 0.819645
Target:  5'- --cGGCCgCGCG-GgGGACCcGGggGCg -3'
miRNA:   3'- cauCUGG-GCGCaCgUCUGGuCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 61583 0.79 0.334508
Target:  5'- -gAGACgCGCGUGCAGAacucgcugCAGGggGCg -3'
miRNA:   3'- caUCUGgGCGCACGUCUg-------GUCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 65035 0.69 0.859341
Target:  5'- --uGGCCCGCGUGCAGccCCGGcuaauGAcGCg -3'
miRNA:   3'- cauCUGGGCGCACGUCu-GGUC-----CUuCG- -5'
14605 3' -55.9 NC_003521.1 + 66654 0.66 0.959028
Target:  5'- --cGACCuucgugCGCGgccUGCAGGCCcuGGAGCg -3'
miRNA:   3'- cauCUGG------GCGC---ACGUCUGGucCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.