miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14606 5' -57.7 NC_003521.1 + 202919 0.66 0.910538
Target:  5'- -aCAcCGCCGGGU--GCUACCGUGAu -3'
miRNA:   3'- aaGUaGUGGUCCGucCGGUGGCACUc -5'
14606 5' -57.7 NC_003521.1 + 23325 0.66 0.910538
Target:  5'- -cCGUgGCCAuGCAGGCCACCu---- -3'
miRNA:   3'- aaGUAgUGGUcCGUCCGGUGGcacuc -5'
14606 5' -57.7 NC_003521.1 + 106300 0.66 0.910538
Target:  5'- -aCAgcaACCAGGC-GGCgGCCGUGc- -3'
miRNA:   3'- aaGUag-UGGUCCGuCCGgUGGCACuc -5'
14606 5' -57.7 NC_003521.1 + 169468 0.66 0.910538
Target:  5'- gUUCGUCGCCAGGCGcGUCGUCGUuGGc -3'
miRNA:   3'- -AAGUAGUGGUCCGUcCGGUGGCAcUC- -5'
14606 5' -57.7 NC_003521.1 + 212465 0.66 0.910538
Target:  5'- -cCAUCaACCAGGcCAGGC--CCGUGGc -3'
miRNA:   3'- aaGUAG-UGGUCC-GUCCGguGGCACUc -5'
14606 5' -57.7 NC_003521.1 + 76175 0.66 0.904564
Target:  5'- gUCGUC-----GCGGGCCugCGUGAGg -3'
miRNA:   3'- aAGUAGuggucCGUCCGGugGCACUC- -5'
14606 5' -57.7 NC_003521.1 + 99448 0.66 0.904564
Target:  5'- gUCGUCAUCGGGCAccGcGUCACCGa--- -3'
miRNA:   3'- aAGUAGUGGUCCGU--C-CGGUGGCacuc -5'
14606 5' -57.7 NC_003521.1 + 149785 0.66 0.904564
Target:  5'- cUCAaCGCCAcGGCGuuccgcgaacGGCCGgCCGUGAc -3'
miRNA:   3'- aAGUaGUGGU-CCGU----------CCGGU-GGCACUc -5'
14606 5' -57.7 NC_003521.1 + 124579 0.66 0.904564
Target:  5'- -cCGagGCCAGGUuGGCCACCaUGGa -3'
miRNA:   3'- aaGUagUGGUCCGuCCGGUGGcACUc -5'
14606 5' -57.7 NC_003521.1 + 61770 0.66 0.904564
Target:  5'- -cCGUCACCGGGaccGCCGCCGg--- -3'
miRNA:   3'- aaGUAGUGGUCCgucCGGUGGCacuc -5'
14606 5' -57.7 NC_003521.1 + 126851 0.66 0.904564
Target:  5'- -gCAcCGCCAggaacagcucgcGGCAGGCCugCGUcaguGAGa -3'
miRNA:   3'- aaGUaGUGGU------------CCGUCCGGugGCA----CUC- -5'
14606 5' -57.7 NC_003521.1 + 125777 0.66 0.904564
Target:  5'- -aCGUCGCuCAGGCAgccGGCCugCGa--- -3'
miRNA:   3'- aaGUAGUG-GUCCGU---CCGGugGCacuc -5'
14606 5' -57.7 NC_003521.1 + 65492 0.66 0.904564
Target:  5'- --gGUgACCAGGCAGGCgACCu---- -3'
miRNA:   3'- aagUAgUGGUCCGUCCGgUGGcacuc -5'
14606 5' -57.7 NC_003521.1 + 24480 0.66 0.904564
Target:  5'- cUCA-CACCcucGguGGCCACCGaGAGa -3'
miRNA:   3'- aAGUaGUGGuc-CguCCGGUGGCaCUC- -5'
14606 5' -57.7 NC_003521.1 + 119893 0.66 0.902729
Target:  5'- cUCGUCGCCccgcGGGUGGGCCuggaacagguggauGCCGcUGAc -3'
miRNA:   3'- aAGUAGUGG----UCCGUCCGG--------------UGGC-ACUc -5'
14606 5' -57.7 NC_003521.1 + 37465 0.66 0.898368
Target:  5'- ---cUCGCgc-GCGGGCCACCGUGGu -3'
miRNA:   3'- aaguAGUGgucCGUCCGGUGGCACUc -5'
14606 5' -57.7 NC_003521.1 + 86181 0.66 0.891951
Target:  5'- -gCG-CACCAGcgacucGCGGGCCACgGUGGa -3'
miRNA:   3'- aaGUaGUGGUC------CGUCCGGUGgCACUc -5'
14606 5' -57.7 NC_003521.1 + 92368 0.66 0.891951
Target:  5'- uUUCGUCAUCAGcacGCAccGGCCACCccugGAGc -3'
miRNA:   3'- -AAGUAGUGGUC---CGU--CCGGUGGca--CUC- -5'
14606 5' -57.7 NC_003521.1 + 210903 0.66 0.891951
Target:  5'- -cCGUCGCCAGGCccuugacGGCCACgGg--- -3'
miRNA:   3'- aaGUAGUGGUCCGu------CCGGUGgCacuc -5'
14606 5' -57.7 NC_003521.1 + 16929 0.66 0.891951
Target:  5'- aUCAUCACCAGGaacgaccGCCguuACCGUcGGGg -3'
miRNA:   3'- aAGUAGUGGUCCguc----CGG---UGGCA-CUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.