Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14606 | 5' | -57.7 | NC_003521.1 | + | 202919 | 0.66 | 0.910538 |
Target: 5'- -aCAcCGCCGGGU--GCUACCGUGAu -3' miRNA: 3'- aaGUaGUGGUCCGucCGGUGGCACUc -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 23325 | 0.66 | 0.910538 |
Target: 5'- -cCGUgGCCAuGCAGGCCACCu---- -3' miRNA: 3'- aaGUAgUGGUcCGUCCGGUGGcacuc -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 169468 | 0.66 | 0.910538 |
Target: 5'- gUUCGUCGCCAGGCGcGUCGUCGUuGGc -3' miRNA: 3'- -AAGUAGUGGUCCGUcCGGUGGCAcUC- -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 106300 | 0.66 | 0.910538 |
Target: 5'- -aCAgcaACCAGGC-GGCgGCCGUGc- -3' miRNA: 3'- aaGUag-UGGUCCGuCCGgUGGCACuc -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 212465 | 0.66 | 0.910538 |
Target: 5'- -cCAUCaACCAGGcCAGGC--CCGUGGc -3' miRNA: 3'- aaGUAG-UGGUCC-GUCCGguGGCACUc -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 99448 | 0.66 | 0.904564 |
Target: 5'- gUCGUCAUCGGGCAccGcGUCACCGa--- -3' miRNA: 3'- aAGUAGUGGUCCGU--C-CGGUGGCacuc -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 149785 | 0.66 | 0.904564 |
Target: 5'- cUCAaCGCCAcGGCGuuccgcgaacGGCCGgCCGUGAc -3' miRNA: 3'- aAGUaGUGGU-CCGU----------CCGGU-GGCACUc -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 124579 | 0.66 | 0.904564 |
Target: 5'- -cCGagGCCAGGUuGGCCACCaUGGa -3' miRNA: 3'- aaGUagUGGUCCGuCCGGUGGcACUc -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 76175 | 0.66 | 0.904564 |
Target: 5'- gUCGUC-----GCGGGCCugCGUGAGg -3' miRNA: 3'- aAGUAGuggucCGUCCGGugGCACUC- -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 61770 | 0.66 | 0.904564 |
Target: 5'- -cCGUCACCGGGaccGCCGCCGg--- -3' miRNA: 3'- aaGUAGUGGUCCgucCGGUGGCacuc -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 126851 | 0.66 | 0.904564 |
Target: 5'- -gCAcCGCCAggaacagcucgcGGCAGGCCugCGUcaguGAGa -3' miRNA: 3'- aaGUaGUGGU------------CCGUCCGGugGCA----CUC- -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 125777 | 0.66 | 0.904564 |
Target: 5'- -aCGUCGCuCAGGCAgccGGCCugCGa--- -3' miRNA: 3'- aaGUAGUG-GUCCGU---CCGGugGCacuc -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 65492 | 0.66 | 0.904564 |
Target: 5'- --gGUgACCAGGCAGGCgACCu---- -3' miRNA: 3'- aagUAgUGGUCCGUCCGgUGGcacuc -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 24480 | 0.66 | 0.904564 |
Target: 5'- cUCA-CACCcucGguGGCCACCGaGAGa -3' miRNA: 3'- aAGUaGUGGuc-CguCCGGUGGCaCUC- -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 119893 | 0.66 | 0.902729 |
Target: 5'- cUCGUCGCCccgcGGGUGGGCCuggaacagguggauGCCGcUGAc -3' miRNA: 3'- aAGUAGUGG----UCCGUCCGG--------------UGGC-ACUc -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 37465 | 0.66 | 0.898368 |
Target: 5'- ---cUCGCgc-GCGGGCCACCGUGGu -3' miRNA: 3'- aaguAGUGgucCGUCCGGUGGCACUc -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 210903 | 0.66 | 0.891951 |
Target: 5'- -cCGUCGCCAGGCccuugacGGCCACgGg--- -3' miRNA: 3'- aaGUAGUGGUCCGu------CCGGUGgCacuc -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 92368 | 0.66 | 0.891951 |
Target: 5'- uUUCGUCAUCAGcacGCAccGGCCACCccugGAGc -3' miRNA: 3'- -AAGUAGUGGUC---CGU--CCGGUGGca--CUC- -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 16929 | 0.66 | 0.891951 |
Target: 5'- aUCAUCACCAGGaacgaccGCCguuACCGUcGGGg -3' miRNA: 3'- aAGUAGUGGUCCguc----CGG---UGGCA-CUC- -5' |
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14606 | 5' | -57.7 | NC_003521.1 | + | 86181 | 0.66 | 0.891951 |
Target: 5'- -gCG-CACCAGcgacucGCGGGCCACgGUGGa -3' miRNA: 3'- aaGUaGUGGUC------CGUCCGGUGgCACUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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