miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14608 3' -64 NC_003521.1 + 148892 0.66 0.710003
Target:  5'- cCGCCgCCGGGUCCaccgcaucgccgccgCCGuccuGGAUCCGGGg -3'
miRNA:   3'- -GCGGaGGUCCGGGa--------------GGC----UCUGGGCCU- -5'
14608 3' -64 NC_003521.1 + 75855 0.66 0.709088
Target:  5'- cCGuCCUCCaugaaagaGGGCCCUCuccggcgacgCGAGcCgCCGGAg -3'
miRNA:   3'- -GC-GGAGG--------UCCGGGAG----------GCUCuG-GGCCU- -5'
14608 3' -64 NC_003521.1 + 134718 0.66 0.709088
Target:  5'- gGCCgCCAcGCCCUgcCCGAGGCCuugCGGu -3'
miRNA:   3'- gCGGaGGUcCGGGA--GGCUCUGG---GCCu -5'
14608 3' -64 NC_003521.1 + 194870 0.66 0.709088
Target:  5'- uGCCUCUucuccacGGCCCUCuucgaccgCGAGaucGCCUGGGc -3'
miRNA:   3'- gCGGAGGu------CCGGGAG--------GCUC---UGGGCCU- -5'
14608 3' -64 NC_003521.1 + 42537 0.66 0.699912
Target:  5'- aGCCccCCAgcGGUCCUCCGcGacGCCCGGc -3'
miRNA:   3'- gCGGa-GGU--CCGGGAGGCuC--UGGGCCu -5'
14608 3' -64 NC_003521.1 + 164636 0.66 0.699912
Target:  5'- gGCCcaUCCuguGGCgCCUCaCGcAGGCCCGcGAc -3'
miRNA:   3'- gCGG--AGGu--CCG-GGAG-GC-UCUGGGC-CU- -5'
14608 3' -64 NC_003521.1 + 27381 0.66 0.699912
Target:  5'- aCGCCUUCaAGGCCCgucgCUggGAGACCaucugcucgCGGGu -3'
miRNA:   3'- -GCGGAGG-UCCGGGa---GG--CUCUGG---------GCCU- -5'
14608 3' -64 NC_003521.1 + 233980 0.66 0.694383
Target:  5'- aCGCCUCCcacuacaaccuccucGGcGCCCUCCuGG-UCUGGAu -3'
miRNA:   3'- -GCGGAGG---------------UC-CGGGAGGcUCuGGGCCU- -5'
14608 3' -64 NC_003521.1 + 70979 0.66 0.690689
Target:  5'- -aCCggCCAGGCCCugUCCGuggugGGACCCGu- -3'
miRNA:   3'- gcGGa-GGUCCGGG--AGGC-----UCUGGGCcu -5'
14608 3' -64 NC_003521.1 + 153021 0.66 0.690689
Target:  5'- uCGCgCUCCuGGCCCaggccgcCCGAGACCg--- -3'
miRNA:   3'- -GCG-GAGGuCCGGGa------GGCUCUGGgccu -5'
14608 3' -64 NC_003521.1 + 112794 0.66 0.672125
Target:  5'- cCGCCUaCGGGCacgcgCUCUGGGAcggccgcgacccCCCGGAu -3'
miRNA:   3'- -GCGGAgGUCCGg----GAGGCUCU------------GGGCCU- -5'
14608 3' -64 NC_003521.1 + 88663 0.66 0.672125
Target:  5'- gGCCgCCAGGUCggugggCCGGcGGCCCGGc -3'
miRNA:   3'- gCGGaGGUCCGGga----GGCU-CUGGGCCu -5'
14608 3' -64 NC_003521.1 + 133453 0.66 0.6628
Target:  5'- aCGCaaCUCCAGGaCCU-CGuGACCUGGGu -3'
miRNA:   3'- -GCG--GAGGUCCgGGAgGCuCUGGGCCU- -5'
14608 3' -64 NC_003521.1 + 220186 0.66 0.6628
Target:  5'- gCGCCcaCCAgcgcgcGGCUCUCCGAGcacAUCUGGAa -3'
miRNA:   3'- -GCGGa-GGU------CCGGGAGGCUC---UGGGCCU- -5'
14608 3' -64 NC_003521.1 + 67511 0.67 0.657194
Target:  5'- gGCC-CCAGGUgUcgcugagcaagcuguUCUGGGACUCGGAg -3'
miRNA:   3'- gCGGaGGUCCGgG---------------AGGCUCUGGGCCU- -5'
14608 3' -64 NC_003521.1 + 35615 0.67 0.653453
Target:  5'- cCGCCUgCcGGCCCUggaCGGGcCuCCGGAc -3'
miRNA:   3'- -GCGGAgGuCCGGGAg--GCUCuG-GGCCU- -5'
14608 3' -64 NC_003521.1 + 94046 0.67 0.650646
Target:  5'- cCGCCuucugUCCAGGCCggUUCCaaagcggcgugucuGAGucACCCGGAg -3'
miRNA:   3'- -GCGG-----AGGUCCGG--GAGG--------------CUC--UGGGCCU- -5'
14608 3' -64 NC_003521.1 + 236863 0.67 0.644092
Target:  5'- uGCC-CCGGGUCCUCCGcuucUUCGGAu -3'
miRNA:   3'- gCGGaGGUCCGGGAGGCucu-GGGCCU- -5'
14608 3' -64 NC_003521.1 + 7397 0.67 0.644092
Target:  5'- cCGCgUCgAGGCCgUCgGAGcCaCCGGGg -3'
miRNA:   3'- -GCGgAGgUCCGGgAGgCUCuG-GGCCU- -5'
14608 3' -64 NC_003521.1 + 195924 0.67 0.644092
Target:  5'- uCGCCgCCGcGCCCgUCUGAGAUCCGu- -3'
miRNA:   3'- -GCGGaGGUcCGGG-AGGCUCUGGGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.