Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14608 | 5' | -54.9 | NC_003521.1 | + | 212083 | 0.66 | 0.976539 |
Target: 5'- cGGCCCGcGcGCGUcuGGuuGUCGGCGUGc -3' miRNA: 3'- -CCGGGCuCuCGUAcuCC--UAGUCGUAC- -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 187192 | 0.66 | 0.976539 |
Target: 5'- cGGCCCGccuGCAUcGGGGAcauucgUCGGCGg- -3' miRNA: 3'- -CCGGGCucuCGUA-CUCCU------AGUCGUac -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 26028 | 0.66 | 0.976539 |
Target: 5'- cGCCCGAcGGCGgugaaGAGGA-CGGCGg- -3' miRNA: 3'- cCGGGCUcUCGUa----CUCCUaGUCGUac -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 63786 | 0.66 | 0.976539 |
Target: 5'- aGCUgGcGGGCAUGcuGAUCAGCAUc -3' miRNA: 3'- cCGGgCuCUCGUACucCUAGUCGUAc -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 211343 | 0.66 | 0.974039 |
Target: 5'- gGGCgCGAGuGguUGGGGucccgCAGCAg- -3' miRNA: 3'- -CCGgGCUCuCguACUCCua---GUCGUac -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 31514 | 0.66 | 0.970221 |
Target: 5'- aGCCCGuGGGCAaGAGGAaguaaucguccacCAGCGUc -3' miRNA: 3'- cCGGGCuCUCGUaCUCCUa------------GUCGUAc -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 185332 | 0.66 | 0.968468 |
Target: 5'- cGCCUGgcuGGAGCAccagGAGGA-CGGCAa- -3' miRNA: 3'- cCGGGC---UCUCGUa---CUCCUaGUCGUac -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 126255 | 0.66 | 0.968468 |
Target: 5'- cGCCCGAGuacuGCAgcGGGAUCucGCAa- -3' miRNA: 3'- cCGGGCUCu---CGUacUCCUAGu-CGUac -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 73395 | 0.66 | 0.968468 |
Target: 5'- uGGUCCacGGAGgAUGGGGAggaCAGCAg- -3' miRNA: 3'- -CCGGGc-UCUCgUACUCCUa--GUCGUac -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 164996 | 0.66 | 0.968468 |
Target: 5'- -cCCCGAGGGCGaGAucggccgcaaGGAcagguuccUCAGCAUGg -3' miRNA: 3'- ccGGGCUCUCGUaCU----------CCU--------AGUCGUAC- -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 44250 | 0.67 | 0.958596 |
Target: 5'- uGCgCGGGAguccggcgucacGCcgGAGGAgaUCAGCGUGc -3' miRNA: 3'- cCGgGCUCU------------CGuaCUCCU--AGUCGUAC- -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 87289 | 0.67 | 0.958234 |
Target: 5'- gGGCCCGAGGugcGCGUGuucaagaAGGugcgCAGCGa- -3' miRNA: 3'- -CCGGGCUCU---CGUAC-------UCCua--GUCGUac -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 36709 | 0.67 | 0.954881 |
Target: 5'- uGGCCCGAGcAGgugGAGGcgCAGUg-- -3' miRNA: 3'- -CCGGGCUC-UCguaCUCCuaGUCGuac -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 34294 | 0.67 | 0.950946 |
Target: 5'- cGCCC-AGGGcCGUGAGGGgcUCGcGCGUGu -3' miRNA: 3'- cCGGGcUCUC-GUACUCCU--AGU-CGUAC- -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 87753 | 0.67 | 0.942404 |
Target: 5'- cGGCCCGGGccccGGCGgcgGAGGA--GGCcUGg -3' miRNA: 3'- -CCGGGCUC----UCGUa--CUCCUagUCGuAC- -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 135957 | 0.67 | 0.942404 |
Target: 5'- --aCCGAGGGCGUGgacAGGGUCgugaucucgcccAGCGUGu -3' miRNA: 3'- ccgGGCUCUCGUAC---UCCUAG------------UCGUAC- -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 123349 | 0.67 | 0.942404 |
Target: 5'- aGGCCCGucgccGGGUGUgGAGGAggCGGCGg- -3' miRNA: 3'- -CCGGGCu----CUCGUA-CUCCUa-GUCGUac -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 178845 | 0.68 | 0.937792 |
Target: 5'- cGGCgCGGGGGCGacGGGAaagUCAGCGg- -3' miRNA: 3'- -CCGgGCUCUCGUacUCCU---AGUCGUac -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 198916 | 0.68 | 0.937792 |
Target: 5'- uGCCCaGcAGGGCGUaGAGGAUgGGguUGa -3' miRNA: 3'- cCGGG-C-UCUCGUA-CUCCUAgUCguAC- -5' |
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14608 | 5' | -54.9 | NC_003521.1 | + | 53394 | 0.68 | 0.937318 |
Target: 5'- aGGCCgCGGcGAGCA-GGGGAuggcgcgUCGGCAg- -3' miRNA: 3'- -CCGG-GCU-CUCGUaCUCCU-------AGUCGUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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