miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14608 5' -54.9 NC_003521.1 + 187192 0.66 0.976539
Target:  5'- cGGCCCGccuGCAUcGGGGAcauucgUCGGCGg- -3'
miRNA:   3'- -CCGGGCucuCGUA-CUCCU------AGUCGUac -5'
14608 5' -54.9 NC_003521.1 + 63786 0.66 0.976539
Target:  5'- aGCUgGcGGGCAUGcuGAUCAGCAUc -3'
miRNA:   3'- cCGGgCuCUCGUACucCUAGUCGUAc -5'
14608 5' -54.9 NC_003521.1 + 26028 0.66 0.976539
Target:  5'- cGCCCGAcGGCGgugaaGAGGA-CGGCGg- -3'
miRNA:   3'- cCGGGCUcUCGUa----CUCCUaGUCGUac -5'
14608 5' -54.9 NC_003521.1 + 212083 0.66 0.976539
Target:  5'- cGGCCCGcGcGCGUcuGGuuGUCGGCGUGc -3'
miRNA:   3'- -CCGGGCuCuCGUAcuCC--UAGUCGUAC- -5'
14608 5' -54.9 NC_003521.1 + 211343 0.66 0.974039
Target:  5'- gGGCgCGAGuGguUGGGGucccgCAGCAg- -3'
miRNA:   3'- -CCGgGCUCuCguACUCCua---GUCGUac -5'
14608 5' -54.9 NC_003521.1 + 31514 0.66 0.970221
Target:  5'- aGCCCGuGGGCAaGAGGAaguaaucguccacCAGCGUc -3'
miRNA:   3'- cCGGGCuCUCGUaCUCCUa------------GUCGUAc -5'
14608 5' -54.9 NC_003521.1 + 164996 0.66 0.968468
Target:  5'- -cCCCGAGGGCGaGAucggccgcaaGGAcagguuccUCAGCAUGg -3'
miRNA:   3'- ccGGGCUCUCGUaCU----------CCU--------AGUCGUAC- -5'
14608 5' -54.9 NC_003521.1 + 185332 0.66 0.968468
Target:  5'- cGCCUGgcuGGAGCAccagGAGGA-CGGCAa- -3'
miRNA:   3'- cCGGGC---UCUCGUa---CUCCUaGUCGUac -5'
14608 5' -54.9 NC_003521.1 + 126255 0.66 0.968468
Target:  5'- cGCCCGAGuacuGCAgcGGGAUCucGCAa- -3'
miRNA:   3'- cCGGGCUCu---CGUacUCCUAGu-CGUac -5'
14608 5' -54.9 NC_003521.1 + 73395 0.66 0.968468
Target:  5'- uGGUCCacGGAGgAUGGGGAggaCAGCAg- -3'
miRNA:   3'- -CCGGGc-UCUCgUACUCCUa--GUCGUac -5'
14608 5' -54.9 NC_003521.1 + 44250 0.67 0.958596
Target:  5'- uGCgCGGGAguccggcgucacGCcgGAGGAgaUCAGCGUGc -3'
miRNA:   3'- cCGgGCUCU------------CGuaCUCCU--AGUCGUAC- -5'
14608 5' -54.9 NC_003521.1 + 87289 0.67 0.958234
Target:  5'- gGGCCCGAGGugcGCGUGuucaagaAGGugcgCAGCGa- -3'
miRNA:   3'- -CCGGGCUCU---CGUAC-------UCCua--GUCGUac -5'
14608 5' -54.9 NC_003521.1 + 36709 0.67 0.954881
Target:  5'- uGGCCCGAGcAGgugGAGGcgCAGUg-- -3'
miRNA:   3'- -CCGGGCUC-UCguaCUCCuaGUCGuac -5'
14608 5' -54.9 NC_003521.1 + 34294 0.67 0.950946
Target:  5'- cGCCC-AGGGcCGUGAGGGgcUCGcGCGUGu -3'
miRNA:   3'- cCGGGcUCUC-GUACUCCU--AGU-CGUAC- -5'
14608 5' -54.9 NC_003521.1 + 87753 0.67 0.942404
Target:  5'- cGGCCCGGGccccGGCGgcgGAGGA--GGCcUGg -3'
miRNA:   3'- -CCGGGCUC----UCGUa--CUCCUagUCGuAC- -5'
14608 5' -54.9 NC_003521.1 + 135957 0.67 0.942404
Target:  5'- --aCCGAGGGCGUGgacAGGGUCgugaucucgcccAGCGUGu -3'
miRNA:   3'- ccgGGCUCUCGUAC---UCCUAG------------UCGUAC- -5'
14608 5' -54.9 NC_003521.1 + 123349 0.67 0.942404
Target:  5'- aGGCCCGucgccGGGUGUgGAGGAggCGGCGg- -3'
miRNA:   3'- -CCGGGCu----CUCGUA-CUCCUa-GUCGUac -5'
14608 5' -54.9 NC_003521.1 + 198916 0.68 0.937792
Target:  5'- uGCCCaGcAGGGCGUaGAGGAUgGGguUGa -3'
miRNA:   3'- cCGGG-C-UCUCGUA-CUCCUAgUCguAC- -5'
14608 5' -54.9 NC_003521.1 + 178845 0.68 0.937792
Target:  5'- cGGCgCGGGGGCGacGGGAaagUCAGCGg- -3'
miRNA:   3'- -CCGgGCUCUCGUacUCCU---AGUCGUac -5'
14608 5' -54.9 NC_003521.1 + 53394 0.68 0.937318
Target:  5'- aGGCCgCGGcGAGCA-GGGGAuggcgcgUCGGCAg- -3'
miRNA:   3'- -CCGG-GCU-CUCGUaCUCCU-------AGUCGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.