miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14610 3' -50.1 NC_003521.1 + 220751 1.09 0.016647
Target:  5'- cACGGAGACGAACAGGUACAUCAGAUCc -3'
miRNA:   3'- -UGCCUCUGCUUGUCCAUGUAGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 126697 0.76 0.842197
Target:  5'- gAUGGAGGCGAACAugccGGUGag-CAGAUCc -3'
miRNA:   3'- -UGCCUCUGCUUGU----CCAUguaGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 210121 0.76 0.842197
Target:  5'- -aGGAcGugGGACAGGUACgAUCAGAc- -3'
miRNA:   3'- ugCCU-CugCUUGUCCAUG-UAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 185732 0.74 0.893774
Target:  5'- uGCGGAGGugaucgcCGAGCGGGUGCGcCGGAg- -3'
miRNA:   3'- -UGCCUCU-------GCUUGUCCAUGUaGUCUag -5'
14610 3' -50.1 NC_003521.1 + 179784 0.74 0.918681
Target:  5'- gACGGAGGCGuccaccuGGCGGacgaaGUGCGUCAGGUUg -3'
miRNA:   3'- -UGCCUCUGC-------UUGUC-----CAUGUAGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 18674 0.73 0.935311
Target:  5'- cACGGGGGCGcuGCAGGaccauCAUCAGAgcUCa -3'
miRNA:   3'- -UGCCUCUGCu-UGUCCau---GUAGUCU--AG- -5'
14610 3' -50.1 NC_003521.1 + 170869 0.73 0.940175
Target:  5'- cGCGGGGGCGGgcGCGGGUG-GUCAGGc- -3'
miRNA:   3'- -UGCCUCUGCU--UGUCCAUgUAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 123445 0.72 0.949177
Target:  5'- gACGGAGGCGccguAGCGGGgACcgCGGGUUg -3'
miRNA:   3'- -UGCCUCUGC----UUGUCCaUGuaGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 101729 0.72 0.964366
Target:  5'- gGCGGGGGCGAgAUGGGgaagGCcggCAGGUCg -3'
miRNA:   3'- -UGCCUCUGCU-UGUCCa---UGua-GUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 134187 0.71 0.967601
Target:  5'- gACGGcGAUGAugAGGU-CGUCGGAg- -3'
miRNA:   3'- -UGCCuCUGCUugUCCAuGUAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 151398 0.71 0.967601
Target:  5'- uGCGGGGACGggUAGGgacgGCGUguGuAUg -3'
miRNA:   3'- -UGCCUCUGCuuGUCCa---UGUAguC-UAg -5'
14610 3' -50.1 NC_003521.1 + 174222 0.71 0.967601
Target:  5'- cGCGcGGGuCGGGCAGGggcGCGUCGGAgcUCa -3'
miRNA:   3'- -UGC-CUCuGCUUGUCCa--UGUAGUCU--AG- -5'
14610 3' -50.1 NC_003521.1 + 218040 0.71 0.970623
Target:  5'- gGCGGcGGCGuccGCAGGUAgAUgAGGUCc -3'
miRNA:   3'- -UGCCuCUGCu--UGUCCAUgUAgUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 234837 0.71 0.973437
Target:  5'- gACGGGGACGGcgAUAGcGUggGCAUCGGcGUCg -3'
miRNA:   3'- -UGCCUCUGCU--UGUC-CA--UGUAGUC-UAG- -5'
14610 3' -50.1 NC_003521.1 + 91669 0.71 0.976051
Target:  5'- gACGGAcGACGAGguGGccacgGCGUCguGGAUCu -3'
miRNA:   3'- -UGCCU-CUGCUUguCCa----UGUAG--UCUAG- -5'
14610 3' -50.1 NC_003521.1 + 100441 0.7 0.980705
Target:  5'- gACGGGGGCGGAgAGGa--GUCGGAc- -3'
miRNA:   3'- -UGCCUCUGCUUgUCCaugUAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 181406 0.7 0.984648
Target:  5'- gACGGAGGUGAcCAGGaagAUGUCAGGUUg -3'
miRNA:   3'- -UGCCUCUGCUuGUCCa--UGUAGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 28091 0.7 0.984648
Target:  5'- gGCGGGGAagcCGAGCAGGcGCucgcccaAGAUCg -3'
miRNA:   3'- -UGCCUCU---GCUUGUCCaUGuag----UCUAG- -5'
14610 3' -50.1 NC_003521.1 + 177907 0.7 0.986374
Target:  5'- aGCGG-GGCGAGCGGGaggGCGUC--GUCg -3'
miRNA:   3'- -UGCCuCUGCUUGUCCa--UGUAGucUAG- -5'
14610 3' -50.1 NC_003521.1 + 167909 0.7 0.986374
Target:  5'- aGCGGcaGGugGGGCgccgcgaucgagGGGUACGUCAGGa- -3'
miRNA:   3'- -UGCC--UCugCUUG------------UCCAUGUAGUCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.