miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14610 3' -50.1 NC_003521.1 + 15316 0.68 0.99605
Target:  5'- gACGGcGcCGAGCGGGUG-AUCAGcgCg -3'
miRNA:   3'- -UGCCuCuGCUUGUCCAUgUAGUCuaG- -5'
14610 3' -50.1 NC_003521.1 + 17915 0.67 0.997734
Target:  5'- -gGGAGACGGACGGGcugUACGagguagccagcgaccUCAaGGUCu -3'
miRNA:   3'- ugCCUCUGCUUGUCC---AUGU---------------AGU-CUAG- -5'
14610 3' -50.1 NC_003521.1 + 18674 0.73 0.935311
Target:  5'- cACGGGGGCGcuGCAGGaccauCAUCAGAgcUCa -3'
miRNA:   3'- -UGCCUCUGCu-UGUCCau---GUAGUCU--AG- -5'
14610 3' -50.1 NC_003521.1 + 24264 0.66 0.999097
Target:  5'- uCGGcGGCGAccuggaucucccucgGCAGGUcCAUCGGuAUCg -3'
miRNA:   3'- uGCCuCUGCU---------------UGUCCAuGUAGUC-UAG- -5'
14610 3' -50.1 NC_003521.1 + 28091 0.7 0.984648
Target:  5'- gGCGGGGAagcCGAGCAGGcGCucgcccaAGAUCg -3'
miRNA:   3'- -UGCCUCU---GCUUGUCCaUGuag----UCUAG- -5'
14610 3' -50.1 NC_003521.1 + 32225 0.67 0.997958
Target:  5'- cGCGGcccAGACGGcCAGGUcccacucgaGCGUCAGGc- -3'
miRNA:   3'- -UGCC---UCUGCUuGUCCA---------UGUAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 32440 0.67 0.998817
Target:  5'- gACGGuuACGGAUGGG--CGUCAGAUa -3'
miRNA:   3'- -UGCCucUGCUUGUCCauGUAGUCUAg -5'
14610 3' -50.1 NC_003521.1 + 35210 0.66 0.999346
Target:  5'- -aGGGGGCGcGCGGG----UCGGAUCg -3'
miRNA:   3'- ugCCUCUGCuUGUCCauguAGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 44241 0.67 0.997575
Target:  5'- cUGuuGGCGAGCAGGUcggGCGUCGGGg- -3'
miRNA:   3'- uGCcuCUGCUUGUCCA---UGUAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 45720 0.67 0.998817
Target:  5'- gGCGG-GGCGucuGCGGG-ACG-CGGGUCa -3'
miRNA:   3'- -UGCCuCUGCu--UGUCCaUGUaGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 49967 0.66 0.999573
Target:  5'- -aGGAgGACGAgcgGCGGGUGgGUCgagggagccGGGUCg -3'
miRNA:   3'- ugCCU-CUGCU---UGUCCAUgUAG---------UCUAG- -5'
14610 3' -50.1 NC_003521.1 + 52040 0.66 0.999346
Target:  5'- gGCGGggacccAGACGAGCAGcaGCggCAGAUg -3'
miRNA:   3'- -UGCC------UCUGCUUGUCcaUGuaGUCUAg -5'
14610 3' -50.1 NC_003521.1 + 52759 0.69 0.991833
Target:  5'- -gGGAGACGAGCGGcucUACcgCGGcAUCg -3'
miRNA:   3'- ugCCUCUGCUUGUCc--AUGuaGUC-UAG- -5'
14610 3' -50.1 NC_003521.1 + 63168 0.66 0.99947
Target:  5'- cCGGAGACuGGACGuGUGCAacgCAGAg- -3'
miRNA:   3'- uGCCUCUG-CUUGUcCAUGUa--GUCUag -5'
14610 3' -50.1 NC_003521.1 + 67866 0.66 0.999346
Target:  5'- aGCGGuugGGGCgGAACGGGaggagACGacUCGGAUCu -3'
miRNA:   3'- -UGCC---UCUG-CUUGUCCa----UGU--AGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 69456 0.66 0.999024
Target:  5'- uGCGcGAGGCGcagGGCAGGaucACGUCgaAGGUCa -3'
miRNA:   3'- -UGC-CUCUGC---UUGUCCa--UGUAG--UCUAG- -5'
14610 3' -50.1 NC_003521.1 + 70981 0.67 0.998573
Target:  5'- gACGGAGAUGAGaacCAGGaacUACGUaCGGAc- -3'
miRNA:   3'- -UGCCUCUGCUU---GUCC---AUGUA-GUCUag -5'
14610 3' -50.1 NC_003521.1 + 72536 0.66 0.999346
Target:  5'- uGCGGAGGCGGcgGCGacGGUGuCGUCGucUCg -3'
miRNA:   3'- -UGCCUCUGCU--UGU--CCAU-GUAGUcuAG- -5'
14610 3' -50.1 NC_003521.1 + 76990 0.67 0.997575
Target:  5'- gGCGGcGAUGGGCAGGcacgGCAUCAu--- -3'
miRNA:   3'- -UGCCuCUGCUUGUCCa---UGUAGUcuag -5'
14610 3' -50.1 NC_003521.1 + 82024 0.68 0.99605
Target:  5'- gACGGuGACGuAGCGGGUGCuauGGGUg -3'
miRNA:   3'- -UGCCuCUGC-UUGUCCAUGuagUCUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.