miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14610 3' -50.1 NC_003521.1 + 238509 0.7 0.987946
Target:  5'- -aGGAGgccggcGCGAGCAGGUGCGagAGcUCg -3'
miRNA:   3'- ugCCUC------UGCUUGUCCAUGUagUCuAG- -5'
14610 3' -50.1 NC_003521.1 + 236363 0.66 0.999573
Target:  5'- uCGGGGGCc-GCAggcGGUGCcuUCAGAUCg -3'
miRNA:   3'- uGCCUCUGcuUGU---CCAUGu-AGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 234837 0.71 0.973437
Target:  5'- gACGGGGACGGcgAUAGcGUggGCAUCGGcGUCg -3'
miRNA:   3'- -UGCCUCUGCU--UGUC-CA--UGUAGUC-UAG- -5'
14610 3' -50.1 NC_003521.1 + 220751 1.09 0.016647
Target:  5'- cACGGAGACGAACAGGUACAUCAGAUCc -3'
miRNA:   3'- -UGCCUCUGCUUGUCCAUGUAGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 218040 0.71 0.970623
Target:  5'- gGCGGcGGCGuccGCAGGUAgAUgAGGUCc -3'
miRNA:   3'- -UGCCuCUGCu--UGUCCAUgUAgUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 214045 0.68 0.996628
Target:  5'- cCGGuGGcCGGACAGGUaacugaACAUgAGGUCc -3'
miRNA:   3'- uGCCuCU-GCUUGUCCA------UGUAgUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 210121 0.76 0.842197
Target:  5'- -aGGAcGugGGACAGGUACgAUCAGAc- -3'
miRNA:   3'- ugCCU-CugCUUGUCCAUG-UAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 208270 0.68 0.995395
Target:  5'- cAUGGAgagcucgaugacGACGAGCGGGUcUAUCGcGAUCc -3'
miRNA:   3'- -UGCCU------------CUGCUUGUCCAuGUAGU-CUAG- -5'
14610 3' -50.1 NC_003521.1 + 201082 0.69 0.991833
Target:  5'- gACGGAGggGCGAAaggAGGU-CAUCAGAc- -3'
miRNA:   3'- -UGCCUC--UGCUUg--UCCAuGUAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 193274 0.66 0.999346
Target:  5'- uGCGGAG-CGggUgccGGGacggGCGUCGGAgUCg -3'
miRNA:   3'- -UGCCUCuGCuuG---UCCa---UGUAGUCU-AG- -5'
14610 3' -50.1 NC_003521.1 + 186401 0.68 0.996628
Target:  5'- aGCGGcGGCagcaguGCAGGUAgAUCAGGUa -3'
miRNA:   3'- -UGCCuCUGcu----UGUCCAUgUAGUCUAg -5'
14610 3' -50.1 NC_003521.1 + 185732 0.74 0.893774
Target:  5'- uGCGGAGGugaucgcCGAGCGGGUGCGcCGGAg- -3'
miRNA:   3'- -UGCCUCU-------GCUUGUCCAUGUaGUCUag -5'
14610 3' -50.1 NC_003521.1 + 182111 0.66 0.99947
Target:  5'- cUGGAGACGGugGGcUGCGUCAa--- -3'
miRNA:   3'- uGCCUCUGCUugUCcAUGUAGUcuag -5'
14610 3' -50.1 NC_003521.1 + 181406 0.7 0.984648
Target:  5'- gACGGAGGUGAcCAGGaagAUGUCAGGUUg -3'
miRNA:   3'- -UGCCUCUGCUuGUCCa--UGUAGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 179784 0.74 0.918681
Target:  5'- gACGGAGGCGuccaccuGGCGGacgaaGUGCGUCAGGUUg -3'
miRNA:   3'- -UGCCUCUGC-------UUGUC-----CAUGUAGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 177907 0.7 0.986374
Target:  5'- aGCGG-GGCGAGCGGGaggGCGUC--GUCg -3'
miRNA:   3'- -UGCCuCUGCUUGUCCa--UGUAGucUAG- -5'
14610 3' -50.1 NC_003521.1 + 175388 0.7 0.987946
Target:  5'- gACGGGGACccauGAcccggcGCAGGUGgGUCAGGg- -3'
miRNA:   3'- -UGCCUCUG----CU------UGUCCAUgUAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 174222 0.71 0.967601
Target:  5'- cGCGcGGGuCGGGCAGGggcGCGUCGGAgcUCa -3'
miRNA:   3'- -UGC-CUCuGCUUGUCCa--UGUAGUCU--AG- -5'
14610 3' -50.1 NC_003521.1 + 172731 0.68 0.997133
Target:  5'- uUGGAGACcAGCGGGUugAgguUgAGAUCc -3'
miRNA:   3'- uGCCUCUGcUUGUCCAugU---AgUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 170869 0.73 0.940175
Target:  5'- cGCGGGGGCGGgcGCGGGUG-GUCAGGc- -3'
miRNA:   3'- -UGCCUCUGCU--UGUCCAUgUAGUCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.