miRNA display CGI


Results 1 - 20 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14610 3' -50.1 NC_003521.1 + 101765 0.67 0.998573
Target:  5'- gGCGGAugGugGugcAGCAGGuUGCG-CAGGUCa -3'
miRNA:   3'- -UGCCU--CugC---UUGUCC-AUGUaGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 186401 0.68 0.996628
Target:  5'- aGCGGcGGCagcaguGCAGGUAgAUCAGGUa -3'
miRNA:   3'- -UGCCuCUGcu----UGUCCAUgUAGUCUAg -5'
14610 3' -50.1 NC_003521.1 + 214045 0.68 0.996628
Target:  5'- cCGGuGGcCGGACAGGUaacugaACAUgAGGUCc -3'
miRNA:   3'- uGCCuCU-GCUUGUCCA------UGUAgUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 76990 0.67 0.997575
Target:  5'- gGCGGcGAUGGGCAGGcacgGCAUCAu--- -3'
miRNA:   3'- -UGCCuCUGCUUGUCCa---UGUAGUcuag -5'
14610 3' -50.1 NC_003521.1 + 32225 0.67 0.997958
Target:  5'- cGCGGcccAGACGGcCAGGUcccacucgaGCGUCAGGc- -3'
miRNA:   3'- -UGCC---UCUGCUuGUCCA---------UGUAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 169454 0.67 0.997958
Target:  5'- aGCGGgucgccguGGACGAACAGGUAgGUgGuGGUg -3'
miRNA:   3'- -UGCC--------UCUGCUUGUCCAUgUAgU-CUAg -5'
14610 3' -50.1 NC_003521.1 + 110963 0.67 0.998289
Target:  5'- cGCGGAGgaaGCGGACGGGUcGCccgUAGGUg -3'
miRNA:   3'- -UGCCUC---UGCUUGUCCA-UGua-GUCUAg -5'
14610 3' -50.1 NC_003521.1 + 119027 0.67 0.998289
Target:  5'- cACGGAuuCGGAUAGGgcgggcgGCGUCGGGg- -3'
miRNA:   3'- -UGCCUcuGCUUGUCCa------UGUAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 170532 0.67 0.998289
Target:  5'- gACGGGGACGGgggGCAGGaggguuuaugUACA-CAGcgCg -3'
miRNA:   3'- -UGCCUCUGCU---UGUCC----------AUGUaGUCuaG- -5'
14610 3' -50.1 NC_003521.1 + 82024 0.68 0.99605
Target:  5'- gACGGuGACGuAGCGGGUGCuauGGGUg -3'
miRNA:   3'- -UGCCuCUGC-UUGUCCAUGuagUCUAg -5'
14610 3' -50.1 NC_003521.1 + 153843 0.69 0.99288
Target:  5'- gACGGAugGACGcgcuccagaccAGCAGGUACugcucCAGAUCc -3'
miRNA:   3'- -UGCCU--CUGC-----------UUGUCCAUGua---GUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 137378 0.69 0.989374
Target:  5'- cGCGGAcGCGAACuGGUGCAgacgCGcGUCg -3'
miRNA:   3'- -UGCCUcUGCUUGuCCAUGUa---GUcUAG- -5'
14610 3' -50.1 NC_003521.1 + 210121 0.76 0.842197
Target:  5'- -aGGAcGugGGACAGGUACgAUCAGAc- -3'
miRNA:   3'- ugCCU-CugCUUGUCCAUG-UAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 101729 0.72 0.964366
Target:  5'- gGCGGGGGCGAgAUGGGgaagGCcggCAGGUCg -3'
miRNA:   3'- -UGCCUCUGCU-UGUCCa---UGua-GUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 134187 0.71 0.967601
Target:  5'- gACGGcGAUGAugAGGU-CGUCGGAg- -3'
miRNA:   3'- -UGCCuCUGCUugUCCAuGUAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 218040 0.71 0.970623
Target:  5'- gGCGGcGGCGuccGCAGGUAgAUgAGGUCc -3'
miRNA:   3'- -UGCCuCUGCu--UGUCCAUgUAgUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 28091 0.7 0.984648
Target:  5'- gGCGGGGAagcCGAGCAGGcGCucgcccaAGAUCg -3'
miRNA:   3'- -UGCCUCU---GCUUGUCCaUGuag----UCUAG- -5'
14610 3' -50.1 NC_003521.1 + 181406 0.7 0.984648
Target:  5'- gACGGAGGUGAcCAGGaagAUGUCAGGUUg -3'
miRNA:   3'- -UGCCUCUGCUuGUCCa--UGUAGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 167909 0.7 0.986374
Target:  5'- aGCGGcaGGugGGGCgccgcgaucgagGGGUACGUCAGGa- -3'
miRNA:   3'- -UGCC--UCugCUUG------------UCCAUGUAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 238509 0.7 0.987946
Target:  5'- -aGGAGgccggcGCGAGCAGGUGCGagAGcUCg -3'
miRNA:   3'- ugCCUC------UGCUUGUCCAUGUagUCuAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.