miRNA display CGI


Results 1 - 20 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14610 3' -50.1 NC_003521.1 + 126697 0.76 0.842197
Target:  5'- gAUGGAGGCGAACAugccGGUGag-CAGAUCc -3'
miRNA:   3'- -UGCCUCUGCUUGU----CCAUguaGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 15316 0.68 0.99605
Target:  5'- gACGGcGcCGAGCGGGUG-AUCAGcgCg -3'
miRNA:   3'- -UGCCuCuGCUUGUCCAUgUAGUCuaG- -5'
14610 3' -50.1 NC_003521.1 + 44241 0.67 0.997575
Target:  5'- cUGuuGGCGAGCAGGUcggGCGUCGGGg- -3'
miRNA:   3'- uGCcuCUGCUUGUCCA---UGUAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 49967 0.66 0.999573
Target:  5'- -aGGAgGACGAgcgGCGGGUGgGUCgagggagccGGGUCg -3'
miRNA:   3'- ugCCU-CUGCU---UGUCCAUgUAG---------UCUAG- -5'
14610 3' -50.1 NC_003521.1 + 170869 0.73 0.940175
Target:  5'- cGCGGGGGCGGgcGCGGGUG-GUCAGGc- -3'
miRNA:   3'- -UGCCUCUGCU--UGUCCAUgUAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 123445 0.72 0.949177
Target:  5'- gACGGAGGCGccguAGCGGGgACcgCGGGUUg -3'
miRNA:   3'- -UGCCUCUGC----UUGUCCaUGuaGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 174222 0.71 0.967601
Target:  5'- cGCGcGGGuCGGGCAGGggcGCGUCGGAgcUCa -3'
miRNA:   3'- -UGC-CUCuGCUUGUCCa--UGUAGUCU--AG- -5'
14610 3' -50.1 NC_003521.1 + 234837 0.71 0.973437
Target:  5'- gACGGGGACGGcgAUAGcGUggGCAUCGGcGUCg -3'
miRNA:   3'- -UGCCUCUGCU--UGUC-CA--UGUAGUC-UAG- -5'
14610 3' -50.1 NC_003521.1 + 177907 0.7 0.986374
Target:  5'- aGCGG-GGCGAGCGGGaggGCGUC--GUCg -3'
miRNA:   3'- -UGCCuCUGCUUGUCCa--UGUAGucUAG- -5'
14610 3' -50.1 NC_003521.1 + 208270 0.68 0.995395
Target:  5'- cAUGGAgagcucgaugacGACGAGCGGGUcUAUCGcGAUCc -3'
miRNA:   3'- -UGCCU------------CUGCUUGUCCAuGUAGU-CUAG- -5'
14610 3' -50.1 NC_003521.1 + 52759 0.69 0.991833
Target:  5'- -gGGAGACGAGCGGcucUACcgCGGcAUCg -3'
miRNA:   3'- ugCCUCUGCUUGUCc--AUGuaGUC-UAG- -5'
14610 3' -50.1 NC_003521.1 + 100441 0.7 0.980705
Target:  5'- gACGGGGGCGGAgAGGa--GUCGGAc- -3'
miRNA:   3'- -UGCCUCUGCUUgUCCaugUAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 185732 0.74 0.893774
Target:  5'- uGCGGAGGugaucgcCGAGCGGGUGCGcCGGAg- -3'
miRNA:   3'- -UGCCUCU-------GCUUGUCCAUGUaGUCUag -5'
14610 3' -50.1 NC_003521.1 + 201082 0.69 0.991833
Target:  5'- gACGGAGggGCGAAaggAGGU-CAUCAGAc- -3'
miRNA:   3'- -UGCCUC--UGCUUg--UCCAuGUAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 179784 0.74 0.918681
Target:  5'- gACGGAGGCGuccaccuGGCGGacgaaGUGCGUCAGGUUg -3'
miRNA:   3'- -UGCCUCUGC-------UUGUC-----CAUGUAGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 91669 0.71 0.976051
Target:  5'- gACGGAcGACGAGguGGccacgGCGUCguGGAUCu -3'
miRNA:   3'- -UGCCU-CUGCUUguCCa----UGUAG--UCUAG- -5'
14610 3' -50.1 NC_003521.1 + 146369 0.68 0.995395
Target:  5'- cACGG-GGCGGuucCGGGUACAg-GGAUCc -3'
miRNA:   3'- -UGCCuCUGCUu--GUCCAUGUagUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 172731 0.68 0.997133
Target:  5'- uUGGAGACcAGCGGGUugAgguUgAGAUCc -3'
miRNA:   3'- uGCCUCUGcUUGUCCAugU---AgUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 18674 0.73 0.935311
Target:  5'- cACGGGGGCGcuGCAGGaccauCAUCAGAgcUCa -3'
miRNA:   3'- -UGCCUCUGCu-UGUCCau---GUAGUCU--AG- -5'
14610 3' -50.1 NC_003521.1 + 151398 0.71 0.967601
Target:  5'- uGCGGGGACGggUAGGgacgGCGUguGuAUg -3'
miRNA:   3'- -UGCCUCUGCuuGUCCa---UGUAguC-UAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.