miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14610 3' -50.1 NC_003521.1 + 218040 0.71 0.970623
Target:  5'- gGCGGcGGCGuccGCAGGUAgAUgAGGUCc -3'
miRNA:   3'- -UGCCuCUGCu--UGUCCAUgUAgUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 28091 0.7 0.984648
Target:  5'- gGCGGGGAagcCGAGCAGGcGCucgcccaAGAUCg -3'
miRNA:   3'- -UGCCUCU---GCUUGUCCaUGuag----UCUAG- -5'
14610 3' -50.1 NC_003521.1 + 181406 0.7 0.984648
Target:  5'- gACGGAGGUGAcCAGGaagAUGUCAGGUUg -3'
miRNA:   3'- -UGCCUCUGCUuGUCCa--UGUAGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 167909 0.7 0.986374
Target:  5'- aGCGGcaGGugGGGCgccgcgaucgagGGGUACGUCAGGa- -3'
miRNA:   3'- -UGCC--UCugCUUG------------UCCAUGUAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 214045 0.68 0.996628
Target:  5'- cCGGuGGcCGGACAGGUaacugaACAUgAGGUCc -3'
miRNA:   3'- uGCCuCU-GCUUGUCCA------UGUAgUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 186401 0.68 0.996628
Target:  5'- aGCGGcGGCagcaguGCAGGUAgAUCAGGUa -3'
miRNA:   3'- -UGCCuCUGcu----UGUCCAUgUAGUCUAg -5'
14610 3' -50.1 NC_003521.1 + 82024 0.68 0.99605
Target:  5'- gACGGuGACGuAGCGGGUGCuauGGGUg -3'
miRNA:   3'- -UGCCuCUGC-UUGUCCAUGuagUCUAg -5'
14610 3' -50.1 NC_003521.1 + 153843 0.69 0.99288
Target:  5'- gACGGAugGACGcgcuccagaccAGCAGGUACugcucCAGAUCc -3'
miRNA:   3'- -UGCCU--CUGC-----------UUGUCCAUGua---GUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 137378 0.69 0.989374
Target:  5'- cGCGGAcGCGAACuGGUGCAgacgCGcGUCg -3'
miRNA:   3'- -UGCCUcUGCUUGuCCAUGUa---GUcUAG- -5'
14610 3' -50.1 NC_003521.1 + 238509 0.7 0.987946
Target:  5'- -aGGAGgccggcGCGAGCAGGUGCGagAGcUCg -3'
miRNA:   3'- ugCCUC------UGCUUGUCCAUGUagUCuAG- -5'
14610 3' -50.1 NC_003521.1 + 91669 0.71 0.976051
Target:  5'- gACGGAcGACGAGguGGccacgGCGUCguGGAUCu -3'
miRNA:   3'- -UGCCU-CUGCUUguCCa----UGUAG--UCUAG- -5'
14610 3' -50.1 NC_003521.1 + 234837 0.71 0.973437
Target:  5'- gACGGGGACGGcgAUAGcGUggGCAUCGGcGUCg -3'
miRNA:   3'- -UGCCUCUGCU--UGUC-CA--UGUAGUC-UAG- -5'
14610 3' -50.1 NC_003521.1 + 174222 0.71 0.967601
Target:  5'- cGCGcGGGuCGGGCAGGggcGCGUCGGAgcUCa -3'
miRNA:   3'- -UGC-CUCuGCUUGUCCa--UGUAGUCU--AG- -5'
14610 3' -50.1 NC_003521.1 + 151398 0.71 0.967601
Target:  5'- uGCGGGGACGggUAGGgacgGCGUguGuAUg -3'
miRNA:   3'- -UGCCUCUGCuuGUCCa---UGUAguC-UAg -5'
14610 3' -50.1 NC_003521.1 + 123445 0.72 0.949177
Target:  5'- gACGGAGGCGccguAGCGGGgACcgCGGGUUg -3'
miRNA:   3'- -UGCCUCUGC----UUGUCCaUGuaGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 170869 0.73 0.940175
Target:  5'- cGCGGGGGCGGgcGCGGGUG-GUCAGGc- -3'
miRNA:   3'- -UGCCUCUGCU--UGUCCAUgUAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 18674 0.73 0.935311
Target:  5'- cACGGGGGCGcuGCAGGaccauCAUCAGAgcUCa -3'
miRNA:   3'- -UGCCUCUGCu-UGUCCau---GUAGUCU--AG- -5'
14610 3' -50.1 NC_003521.1 + 179784 0.74 0.918681
Target:  5'- gACGGAGGCGuccaccuGGCGGacgaaGUGCGUCAGGUUg -3'
miRNA:   3'- -UGCCUCUGC-------UUGUC-----CAUGUAGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 185732 0.74 0.893774
Target:  5'- uGCGGAGGugaucgcCGAGCGGGUGCGcCGGAg- -3'
miRNA:   3'- -UGCCUCU-------GCUUGUCCAUGUaGUCUag -5'
14610 3' -50.1 NC_003521.1 + 49967 0.66 0.999573
Target:  5'- -aGGAgGACGAgcgGCGGGUGgGUCgagggagccGGGUCg -3'
miRNA:   3'- ugCCU-CUGCU---UGUCCAUgUAG---------UCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.