miRNA display CGI


Results 21 - 40 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14610 3' -50.1 NC_003521.1 + 86656 0.66 0.999346
Target:  5'- gGCGGccGACG-ACAGGUugA--GGAUCa -3'
miRNA:   3'- -UGCCu-CUGCuUGUCCAugUagUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 91450 0.67 0.998794
Target:  5'- cACGGGgguGACGAggcgcagACAGGUGCG-CAGGa- -3'
miRNA:   3'- -UGCCU---CUGCU-------UGUCCAUGUaGUCUag -5'
14610 3' -50.1 NC_003521.1 + 91669 0.71 0.976051
Target:  5'- gACGGAcGACGAGguGGccacgGCGUCguGGAUCu -3'
miRNA:   3'- -UGCCU-CUGCUUguCCa----UGUAG--UCUAG- -5'
14610 3' -50.1 NC_003521.1 + 96594 0.67 0.998817
Target:  5'- cGCGcccauGAUGAGCAGGcagGCGUCGGcgCa -3'
miRNA:   3'- -UGCcu---CUGCUUGUCCa--UGUAGUCuaG- -5'
14610 3' -50.1 NC_003521.1 + 100441 0.7 0.980705
Target:  5'- gACGGGGGCGGAgAGGa--GUCGGAc- -3'
miRNA:   3'- -UGCCUCUGCUUgUCCaugUAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 101729 0.72 0.964366
Target:  5'- gGCGGGGGCGAgAUGGGgaagGCcggCAGGUCg -3'
miRNA:   3'- -UGCCUCUGCU-UGUCCa---UGua-GUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 101765 0.67 0.998573
Target:  5'- gGCGGAugGugGugcAGCAGGuUGCG-CAGGUCa -3'
miRNA:   3'- -UGCCU--CugC---UUGUCC-AUGUaGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 110963 0.67 0.998289
Target:  5'- cGCGGAGgaaGCGGACGGGUcGCccgUAGGUg -3'
miRNA:   3'- -UGCCUC---UGCUUGUCCA-UGua-GUCUAg -5'
14610 3' -50.1 NC_003521.1 + 119027 0.67 0.998289
Target:  5'- cACGGAuuCGGAUAGGgcgggcgGCGUCGGGg- -3'
miRNA:   3'- -UGCCUcuGCUUGUCCa------UGUAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 123445 0.72 0.949177
Target:  5'- gACGGAGGCGccguAGCGGGgACcgCGGGUUg -3'
miRNA:   3'- -UGCCUCUGC----UUGUCCaUGuaGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 125726 0.67 0.998573
Target:  5'- gACGGGGGCGGcgacggcgcaggGCAGGguuucugggcgACGUCGGGc- -3'
miRNA:   3'- -UGCCUCUGCU------------UGUCCa----------UGUAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 126697 0.76 0.842197
Target:  5'- gAUGGAGGCGAACAugccGGUGag-CAGAUCc -3'
miRNA:   3'- -UGCCUCUGCUUGU----CCAUguaGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 129120 0.66 0.999346
Target:  5'- -aGGucuCGcGCAGGUACGUCAGGc- -3'
miRNA:   3'- ugCCucuGCuUGUCCAUGUAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 130268 0.66 0.999024
Target:  5'- uACGuGGAUcacccgGAACAGGUGCAUCGGc-- -3'
miRNA:   3'- -UGCcUCUG------CUUGUCCAUGUAGUCuag -5'
14610 3' -50.1 NC_003521.1 + 132328 0.66 0.999199
Target:  5'- aGCGGuAGACGAagaGCAGG-AUcgCcaGGAUCa -3'
miRNA:   3'- -UGCC-UCUGCU---UGUCCaUGuaG--UCUAG- -5'
14610 3' -50.1 NC_003521.1 + 134187 0.71 0.967601
Target:  5'- gACGGcGAUGAugAGGU-CGUCGGAg- -3'
miRNA:   3'- -UGCCuCUGCUugUCCAuGUAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 137378 0.69 0.989374
Target:  5'- cGCGGAcGCGAACuGGUGCAgacgCGcGUCg -3'
miRNA:   3'- -UGCCUcUGCUUGuCCAUGUa---GUcUAG- -5'
14610 3' -50.1 NC_003521.1 + 139512 0.66 0.99947
Target:  5'- -aGGAGACGGuGCAGGUGuuCAUCGa--- -3'
miRNA:   3'- ugCCUCUGCU-UGUCCAU--GUAGUcuag -5'
14610 3' -50.1 NC_003521.1 + 146369 0.68 0.995395
Target:  5'- cACGG-GGCGGuucCGGGUACAg-GGAUCc -3'
miRNA:   3'- -UGCCuCUGCUu--GUCCAUGUagUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 150102 0.67 0.997575
Target:  5'- uGCGG-GAacaGAGCGGGUACcuagGGAUCa -3'
miRNA:   3'- -UGCCuCUg--CUUGUCCAUGuag-UCUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.