Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14610 | 3' | -50.1 | NC_003521.1 | + | 238509 | 0.7 | 0.987946 |
Target: 5'- -aGGAGgccggcGCGAGCAGGUGCGagAGcUCg -3' miRNA: 3'- ugCCUC------UGCUUGUCCAUGUagUCuAG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 175388 | 0.7 | 0.987946 |
Target: 5'- gACGGGGACccauGAcccggcGCAGGUGgGUCAGGg- -3' miRNA: 3'- -UGCCUCUG----CU------UGUCCAUgUAGUCUag -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 137378 | 0.69 | 0.989374 |
Target: 5'- cGCGGAcGCGAACuGGUGCAgacgCGcGUCg -3' miRNA: 3'- -UGCCUcUGCUUGuCCAUGUa---GUcUAG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 201082 | 0.69 | 0.991833 |
Target: 5'- gACGGAGggGCGAAaggAGGU-CAUCAGAc- -3' miRNA: 3'- -UGCCUC--UGCUUg--UCCAuGUAGUCUag -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 52759 | 0.69 | 0.991833 |
Target: 5'- -gGGAGACGAGCGGcucUACcgCGGcAUCg -3' miRNA: 3'- ugCCUCUGCUUGUCc--AUGuaGUC-UAG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 153843 | 0.69 | 0.99288 |
Target: 5'- gACGGAugGACGcgcuccagaccAGCAGGUACugcucCAGAUCc -3' miRNA: 3'- -UGCCU--CUGC-----------UUGUCCAUGua---GUCUAG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 146369 | 0.68 | 0.995395 |
Target: 5'- cACGG-GGCGGuucCGGGUACAg-GGAUCc -3' miRNA: 3'- -UGCCuCUGCUu--GUCCAUGUagUCUAG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 208270 | 0.68 | 0.995395 |
Target: 5'- cAUGGAgagcucgaugacGACGAGCGGGUcUAUCGcGAUCc -3' miRNA: 3'- -UGCCU------------CUGCUUGUCCAuGUAGU-CUAG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 82024 | 0.68 | 0.99605 |
Target: 5'- gACGGuGACGuAGCGGGUGCuauGGGUg -3' miRNA: 3'- -UGCCuCUGC-UUGUCCAUGuagUCUAg -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 15316 | 0.68 | 0.99605 |
Target: 5'- gACGGcGcCGAGCGGGUG-AUCAGcgCg -3' miRNA: 3'- -UGCCuCuGCUUGUCCAUgUAGUCuaG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 186401 | 0.68 | 0.996628 |
Target: 5'- aGCGGcGGCagcaguGCAGGUAgAUCAGGUa -3' miRNA: 3'- -UGCCuCUGcu----UGUCCAUgUAGUCUAg -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 214045 | 0.68 | 0.996628 |
Target: 5'- cCGGuGGcCGGACAGGUaacugaACAUgAGGUCc -3' miRNA: 3'- uGCCuCU-GCUUGUCCA------UGUAgUCUAG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 172731 | 0.68 | 0.997133 |
Target: 5'- uUGGAGACcAGCGGGUugAgguUgAGAUCc -3' miRNA: 3'- uGCCUCUGcUUGUCCAugU---AgUCUAG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 76990 | 0.67 | 0.997575 |
Target: 5'- gGCGGcGAUGGGCAGGcacgGCAUCAu--- -3' miRNA: 3'- -UGCCuCUGCUUGUCCa---UGUAGUcuag -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 168770 | 0.67 | 0.997575 |
Target: 5'- gAUGGAGAUGAGCaaGGGUcuGCAcCAGGa- -3' miRNA: 3'- -UGCCUCUGCUUG--UCCA--UGUaGUCUag -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 44241 | 0.67 | 0.997575 |
Target: 5'- cUGuuGGCGAGCAGGUcggGCGUCGGGg- -3' miRNA: 3'- uGCcuCUGCUUGUCCA---UGUAGUCUag -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 150102 | 0.67 | 0.997575 |
Target: 5'- uGCGG-GAacaGAGCGGGUACcuagGGAUCa -3' miRNA: 3'- -UGCCuCUg--CUUGUCCAUGuag-UCUAG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 17915 | 0.67 | 0.997734 |
Target: 5'- -gGGAGACGGACGGGcugUACGagguagccagcgaccUCAaGGUCu -3' miRNA: 3'- ugCCUCUGCUUGUCC---AUGU---------------AGU-CUAG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 169454 | 0.67 | 0.997958 |
Target: 5'- aGCGGgucgccguGGACGAACAGGUAgGUgGuGGUg -3' miRNA: 3'- -UGCC--------UCUGCUUGUCCAUgUAgU-CUAg -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 32225 | 0.67 | 0.997958 |
Target: 5'- cGCGGcccAGACGGcCAGGUcccacucgaGCGUCAGGc- -3' miRNA: 3'- -UGCC---UCUGCUuGUCCA---------UGUAGUCUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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