miRNA display CGI


Results 21 - 40 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14610 3' -50.1 NC_003521.1 + 125726 0.67 0.998573
Target:  5'- gACGGGGGCGGcgacggcgcaggGCAGGguuucugggcgACGUCGGGc- -3'
miRNA:   3'- -UGCCUCUGCU------------UGUCCa----------UGUAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 70981 0.67 0.998573
Target:  5'- gACGGAGAUGAGaacCAGGaacUACGUaCGGAc- -3'
miRNA:   3'- -UGCCUCUGCUU---GUCC---AUGUA-GUCUag -5'
14610 3' -50.1 NC_003521.1 + 101765 0.67 0.998573
Target:  5'- gGCGGAugGugGugcAGCAGGuUGCG-CAGGUCa -3'
miRNA:   3'- -UGCCU--CugC---UUGUCC-AUGUaGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 170532 0.67 0.998289
Target:  5'- gACGGGGACGGgggGCAGGaggguuuaugUACA-CAGcgCg -3'
miRNA:   3'- -UGCCUCUGCU---UGUCC----------AUGUaGUCuaG- -5'
14610 3' -50.1 NC_003521.1 + 119027 0.67 0.998289
Target:  5'- cACGGAuuCGGAUAGGgcgggcgGCGUCGGGg- -3'
miRNA:   3'- -UGCCUcuGCUUGUCCa------UGUAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 110963 0.67 0.998289
Target:  5'- cGCGGAGgaaGCGGACGGGUcGCccgUAGGUg -3'
miRNA:   3'- -UGCCUC---UGCUUGUCCA-UGua-GUCUAg -5'
14610 3' -50.1 NC_003521.1 + 32225 0.67 0.997958
Target:  5'- cGCGGcccAGACGGcCAGGUcccacucgaGCGUCAGGc- -3'
miRNA:   3'- -UGCC---UCUGCUuGUCCA---------UGUAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 169454 0.67 0.997958
Target:  5'- aGCGGgucgccguGGACGAACAGGUAgGUgGuGGUg -3'
miRNA:   3'- -UGCC--------UCUGCUUGUCCAUgUAgU-CUAg -5'
14610 3' -50.1 NC_003521.1 + 17915 0.67 0.997734
Target:  5'- -gGGAGACGGACGGGcugUACGagguagccagcgaccUCAaGGUCu -3'
miRNA:   3'- ugCCUCUGCUUGUCC---AUGU---------------AGU-CUAG- -5'
14610 3' -50.1 NC_003521.1 + 76990 0.67 0.997575
Target:  5'- gGCGGcGAUGGGCAGGcacgGCAUCAu--- -3'
miRNA:   3'- -UGCCuCUGCUUGUCCa---UGUAGUcuag -5'
14610 3' -50.1 NC_003521.1 + 44241 0.67 0.997575
Target:  5'- cUGuuGGCGAGCAGGUcggGCGUCGGGg- -3'
miRNA:   3'- uGCcuCUGCUUGUCCA---UGUAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 168770 0.67 0.997575
Target:  5'- gAUGGAGAUGAGCaaGGGUcuGCAcCAGGa- -3'
miRNA:   3'- -UGCCUCUGCUUG--UCCA--UGUaGUCUag -5'
14610 3' -50.1 NC_003521.1 + 150102 0.67 0.997575
Target:  5'- uGCGG-GAacaGAGCGGGUACcuagGGAUCa -3'
miRNA:   3'- -UGCCuCUg--CUUGUCCAUGuag-UCUAG- -5'
14610 3' -50.1 NC_003521.1 + 172731 0.68 0.997133
Target:  5'- uUGGAGACcAGCGGGUugAgguUgAGAUCc -3'
miRNA:   3'- uGCCUCUGcUUGUCCAugU---AgUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 186401 0.68 0.996628
Target:  5'- aGCGGcGGCagcaguGCAGGUAgAUCAGGUa -3'
miRNA:   3'- -UGCCuCUGcu----UGUCCAUgUAGUCUAg -5'
14610 3' -50.1 NC_003521.1 + 214045 0.68 0.996628
Target:  5'- cCGGuGGcCGGACAGGUaacugaACAUgAGGUCc -3'
miRNA:   3'- uGCCuCU-GCUUGUCCA------UGUAgUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 15316 0.68 0.99605
Target:  5'- gACGGcGcCGAGCGGGUG-AUCAGcgCg -3'
miRNA:   3'- -UGCCuCuGCUUGUCCAUgUAGUCuaG- -5'
14610 3' -50.1 NC_003521.1 + 82024 0.68 0.99605
Target:  5'- gACGGuGACGuAGCGGGUGCuauGGGUg -3'
miRNA:   3'- -UGCCuCUGC-UUGUCCAUGuagUCUAg -5'
14610 3' -50.1 NC_003521.1 + 208270 0.68 0.995395
Target:  5'- cAUGGAgagcucgaugacGACGAGCGGGUcUAUCGcGAUCc -3'
miRNA:   3'- -UGCCU------------CUGCUUGUCCAuGUAGU-CUAG- -5'
14610 3' -50.1 NC_003521.1 + 146369 0.68 0.995395
Target:  5'- cACGG-GGCGGuucCGGGUACAg-GGAUCc -3'
miRNA:   3'- -UGCCuCUGCUu--GUCCAUGUagUCUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.