miRNA display CGI


Results 41 - 60 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14611 3' -56.7 NC_003521.1 + 68491 0.66 0.935446
Target:  5'- cGCCGCCccucacccGUcCGCCGCGAcCgGCCUgGCg -3'
miRNA:   3'- -CGGUGG--------UA-GUGGUGCUaGaCGGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 226558 0.66 0.935446
Target:  5'- -aCGCUGUCGUCACGAUC-GCgCCGCg -3'
miRNA:   3'- cgGUGGUAGUGGUGCUAGaCGgGGUG- -5'
14611 3' -56.7 NC_003521.1 + 141608 0.66 0.935446
Target:  5'- aGCCcuAUCGUCAuCCAgGA-CUGCgCCGCg -3'
miRNA:   3'- -CGG--UGGUAGU-GGUgCUaGACGgGGUG- -5'
14611 3' -56.7 NC_003521.1 + 135675 0.66 0.935446
Target:  5'- cGUCACCAccUCGuCCugGGggaccucgggggUCUGCCUCAg -3'
miRNA:   3'- -CGGUGGU--AGU-GGugCU------------AGACGGGGUg -5'
14611 3' -56.7 NC_003521.1 + 154219 0.66 0.935446
Target:  5'- uCUACCGcCACCACGAgcgcuUCUuCCCCGg -3'
miRNA:   3'- cGGUGGUaGUGGUGCU-----AGAcGGGGUg -5'
14611 3' -56.7 NC_003521.1 + 127236 0.66 0.935446
Target:  5'- cGCCcCCGUUGCCccCGAggccCaGCCCCACc -3'
miRNA:   3'- -CGGuGGUAGUGGu-GCUa---GaCGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 135667 0.66 0.935446
Target:  5'- aGCCcCCGUCGCCugGAauuggUCUccgGCCUCu- -3'
miRNA:   3'- -CGGuGGUAGUGGugCU-----AGA---CGGGGug -5'
14611 3' -56.7 NC_003521.1 + 77070 0.66 0.935446
Target:  5'- cGCCGCCGUgagCGCCGCug-UUGCCgCCGg -3'
miRNA:   3'- -CGGUGGUA---GUGGUGcuaGACGG-GGUg -5'
14611 3' -56.7 NC_003521.1 + 163010 0.66 0.930567
Target:  5'- aGCgCGCUGcUCACCAUGAUCUGCgagaaCgGCa -3'
miRNA:   3'- -CG-GUGGU-AGUGGUGCUAGACGg----GgUG- -5'
14611 3' -56.7 NC_003521.1 + 117272 0.66 0.930567
Target:  5'- aCCGCCGUCgucgGCCGuggugcCGGcuccccucacgCUGCCCCACg -3'
miRNA:   3'- cGGUGGUAG----UGGU------GCUa----------GACGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 214790 0.66 0.930567
Target:  5'- cGCCGCCGuccucuUCACCGCcGUCggGCgCCGg -3'
miRNA:   3'- -CGGUGGU------AGUGGUGcUAGa-CGgGGUg -5'
14611 3' -56.7 NC_003521.1 + 40339 0.66 0.930567
Target:  5'- cGCCGCCAguuUgGCCAgGAUCacgGCgCUGCg -3'
miRNA:   3'- -CGGUGGU---AgUGGUgCUAGa--CGgGGUG- -5'
14611 3' -56.7 NC_003521.1 + 197341 0.66 0.930567
Target:  5'- gGCCGCCGcgGCCAgcacggccgcCGcgCUGgCCCGCu -3'
miRNA:   3'- -CGGUGGUagUGGU----------GCuaGACgGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 234333 0.66 0.930567
Target:  5'- -aCACCGUCACacucuCACGAUCccacgccaUGCCCUg- -3'
miRNA:   3'- cgGUGGUAGUG-----GUGCUAG--------ACGGGGug -5'
14611 3' -56.7 NC_003521.1 + 88068 0.66 0.930567
Target:  5'- -aCGCCGUU-CCGCGcgCUGCCCg-- -3'
miRNA:   3'- cgGUGGUAGuGGUGCuaGACGGGgug -5'
14611 3' -56.7 NC_003521.1 + 112648 0.66 0.930567
Target:  5'- uGCCACCcggugCugCACGA----CCCCACg -3'
miRNA:   3'- -CGGUGGua---GugGUGCUagacGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 144875 0.66 0.930567
Target:  5'- cGCCuACCGcaucuUCGCCAaGAUgCUGCgggCCCACg -3'
miRNA:   3'- -CGG-UGGU-----AGUGGUgCUA-GACG---GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 71385 0.66 0.930066
Target:  5'- cGCCGCCGaCGCCgucguccgcgugaGCGAggcggCgGCCCCGa -3'
miRNA:   3'- -CGGUGGUaGUGG-------------UGCUa----GaCGGGGUg -5'
14611 3' -56.7 NC_003521.1 + 171148 0.66 0.930066
Target:  5'- aCCACCGUCACC-CGAacacgCUGCauaguuaCCCGu -3'
miRNA:   3'- cGGUGGUAGUGGuGCUa----GACG-------GGGUg -5'
14611 3' -56.7 NC_003521.1 + 132490 0.66 0.929059
Target:  5'- aCCGCCGUCGgCGCGGacgugauuuuugcuUCUGgUCUCACg -3'
miRNA:   3'- cGGUGGUAGUgGUGCU--------------AGAC-GGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.