miRNA display CGI


Results 21 - 40 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14611 3' -56.7 NC_003521.1 + 130055 0.66 0.944535
Target:  5'- gGCCACgcaCGUCuuCCGCGGcCUGCuCUCGCu -3'
miRNA:   3'- -CGGUG---GUAGu-GGUGCUaGACG-GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 58461 0.66 0.944535
Target:  5'- cGCgCACCAcgUCgACCAgGGUCUGCCaauggcCCAg -3'
miRNA:   3'- -CG-GUGGU--AG-UGGUgCUAGACGG------GGUg -5'
14611 3' -56.7 NC_003521.1 + 105795 0.66 0.944535
Target:  5'- aCCACCGUgacgcagGCCACGG--UGCCCgGCa -3'
miRNA:   3'- cGGUGGUAg------UGGUGCUagACGGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 75083 0.66 0.944102
Target:  5'- cGCCGCCGcccucccUCAacaacguguuCCGCGAggUGgCCCGCa -3'
miRNA:   3'- -CGGUGGU-------AGU----------GGUGCUagACgGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 29943 0.66 0.942789
Target:  5'- gGCCACCGagGCgACGuacacccuggGCCCUACg -3'
miRNA:   3'- -CGGUGGUagUGgUGCuaga------CGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 139313 0.66 0.940102
Target:  5'- cGCCugCugGUCgGCCGCG-UCUGgCCgCCGCu -3'
miRNA:   3'- -CGGugG--UAG-UGGUGCuAGAC-GG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 203385 0.66 0.940102
Target:  5'- cGCCGCgGUCGCCucaGGUCccgGCCaCGCc -3'
miRNA:   3'- -CGGUGgUAGUGGug-CUAGa--CGGgGUG- -5'
14611 3' -56.7 NC_003521.1 + 153262 0.66 0.940102
Target:  5'- cGCCugcCCGUCAuCCACaagCUGCCCaagCGCg -3'
miRNA:   3'- -CGGu--GGUAGU-GGUGcuaGACGGG---GUG- -5'
14611 3' -56.7 NC_003521.1 + 209804 0.66 0.940102
Target:  5'- aCCACCAcgaacgcguccUCGCCgGCGccGUCgucGCCCCAUc -3'
miRNA:   3'- cGGUGGU-----------AGUGG-UGC--UAGa--CGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 28940 0.66 0.940102
Target:  5'- gGCCACUAU-ACCACGcgCggcGCCCUc- -3'
miRNA:   3'- -CGGUGGUAgUGGUGCuaGa--CGGGGug -5'
14611 3' -56.7 NC_003521.1 + 143755 0.66 0.940102
Target:  5'- aCCACCGaUGCCGCG-UCUGCCacuucgacaUCACg -3'
miRNA:   3'- cGGUGGUaGUGGUGCuAGACGG---------GGUG- -5'
14611 3' -56.7 NC_003521.1 + 235301 0.66 0.940102
Target:  5'- gGCUGCCGUCACCGuCGcugCUGCuacuCCUGCc -3'
miRNA:   3'- -CGGUGGUAGUGGU-GCua-GACG----GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 181408 0.66 0.940102
Target:  5'- cGCCGCUGUCgcguGCCACGAaCUuCUCCAg -3'
miRNA:   3'- -CGGUGGUAG----UGGUGCUaGAcGGGGUg -5'
14611 3' -56.7 NC_003521.1 + 123946 0.66 0.940102
Target:  5'- cGCCGCCGcaGCCGCGccaCUGCgCgCGCa -3'
miRNA:   3'- -CGGUGGUagUGGUGCua-GACG-GgGUG- -5'
14611 3' -56.7 NC_003521.1 + 190061 0.66 0.940102
Target:  5'- cGCCGCgCGgucuUCACgUACGuUCUGgCCCGCu -3'
miRNA:   3'- -CGGUG-GU----AGUG-GUGCuAGACgGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 89858 0.66 0.939189
Target:  5'- gGCCGCCAgCGCCGCGucgcgcgaCUGCacgaugaucugaCCGCg -3'
miRNA:   3'- -CGGUGGUaGUGGUGCua------GACGg-----------GGUG- -5'
14611 3' -56.7 NC_003521.1 + 114972 0.66 0.937335
Target:  5'- gGCCACCAaggcgcuguacgacCACCGCGA---GCCCgACg -3'
miRNA:   3'- -CGGUGGUa-------------GUGGUGCUagaCGGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 139116 0.66 0.937335
Target:  5'- cGCCGCgCAUCguGCUGagcguacaggacaaGAUCUGCCCCuCg -3'
miRNA:   3'- -CGGUG-GUAG--UGGUg-------------CUAGACGGGGuG- -5'
14611 3' -56.7 NC_003521.1 + 125013 0.66 0.935446
Target:  5'- aGCCACCcgCGCCugagcgGCGGaCUGCUgaCGCg -3'
miRNA:   3'- -CGGUGGuaGUGG------UGCUaGACGGg-GUG- -5'
14611 3' -56.7 NC_003521.1 + 18456 0.66 0.935446
Target:  5'- uGCCGCU-UCgACCGCGggCUGCgCgGCg -3'
miRNA:   3'- -CGGUGGuAG-UGGUGCuaGACGgGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.