miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14611 3' -56.7 NC_003521.1 + 112843 0.66 0.948749
Target:  5'- gGCgGgCGUCAUgGcCGAgCUGCCCCAg -3'
miRNA:   3'- -CGgUgGUAGUGgU-GCUaGACGGGGUg -5'
14611 3' -56.7 NC_003521.1 + 22504 0.66 0.948749
Target:  5'- aCCACCGUgGCCACGGguuUCUGCg---- -3'
miRNA:   3'- cGGUGGUAgUGGUGCU---AGACGgggug -5'
14611 3' -56.7 NC_003521.1 + 234238 0.66 0.948749
Target:  5'- cGCC-CCAUCACUcUGAUCccuuuaCCCUACg -3'
miRNA:   3'- -CGGuGGUAGUGGuGCUAGac----GGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 153532 0.66 0.948749
Target:  5'- cGCCugCAUCGcauCCugGAcuaCUGCCgCAa -3'
miRNA:   3'- -CGGugGUAGU---GGugCUa--GACGGgGUg -5'
14611 3' -56.7 NC_003521.1 + 32880 0.66 0.948749
Target:  5'- uGgCGCCcgCGCCGcCGGUgCUGCCgCCGu -3'
miRNA:   3'- -CgGUGGuaGUGGU-GCUA-GACGG-GGUg -5'
14611 3' -56.7 NC_003521.1 + 185029 0.66 0.948749
Target:  5'- -aCACCGUCACC-UGAUCaccCCCUAUa -3'
miRNA:   3'- cgGUGGUAGUGGuGCUAGac-GGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 129651 0.66 0.948749
Target:  5'- cGgCGCCGUCGCCGgGG-CgGCCgCGCu -3'
miRNA:   3'- -CgGUGGUAGUGGUgCUaGaCGGgGUG- -5'
14611 3' -56.7 NC_003521.1 + 168951 0.66 0.948749
Target:  5'- cGCCGCUGUCGCC---GUC-GCuCCCGCu -3'
miRNA:   3'- -CGGUGGUAGUGGugcUAGaCG-GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 100793 0.66 0.948749
Target:  5'- uGCCGCCAUgGCCu---UCUGCggCCGCu -3'
miRNA:   3'- -CGGUGGUAgUGGugcuAGACGg-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 176190 0.66 0.948749
Target:  5'- -aCACCGUCACCAauaGGgggCaGUCCCAa -3'
miRNA:   3'- cgGUGGUAGUGGUg--CUa--GaCGGGGUg -5'
14611 3' -56.7 NC_003521.1 + 23493 0.66 0.948749
Target:  5'- gGCCGCCGUcCGCCaccgugcugACGAUCUacagcgugGUCaCCACc -3'
miRNA:   3'- -CGGUGGUA-GUGG---------UGCUAGA--------CGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 45643 0.66 0.948749
Target:  5'- cGCCGCCGgcuCCGCGGg--GUCCgGCg -3'
miRNA:   3'- -CGGUGGUaguGGUGCUagaCGGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 112553 0.66 0.944536
Target:  5'- -aCACCAUcCGCaACGcgCUGCCcaCCACg -3'
miRNA:   3'- cgGUGGUA-GUGgUGCuaGACGG--GGUG- -5'
14611 3' -56.7 NC_003521.1 + 137104 0.66 0.944536
Target:  5'- cGgCACCugaACCugGuuuUCcugUGCCCCACg -3'
miRNA:   3'- -CgGUGGuagUGGugCu--AG---ACGGGGUG- -5'
14611 3' -56.7 NC_003521.1 + 168290 0.66 0.944536
Target:  5'- -aCACCGUCGCCGCc----GCCuCCGCa -3'
miRNA:   3'- cgGUGGUAGUGGUGcuagaCGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 107632 0.66 0.944536
Target:  5'- aCCGCgGUCGuCC-CGAUCgccgagGCCgCCACu -3'
miRNA:   3'- cGGUGgUAGU-GGuGCUAGa-----CGG-GGUG- -5'
14611 3' -56.7 NC_003521.1 + 130055 0.66 0.944535
Target:  5'- gGCCACgcaCGUCuuCCGCGGcCUGCuCUCGCu -3'
miRNA:   3'- -CGGUG---GUAGu-GGUGCUaGACG-GGGUG- -5'
14611 3' -56.7 NC_003521.1 + 136735 0.66 0.944535
Target:  5'- cGCCGCCuu--CCGCGucCUGCCgCGCc -3'
miRNA:   3'- -CGGUGGuaguGGUGCuaGACGGgGUG- -5'
14611 3' -56.7 NC_003521.1 + 105795 0.66 0.944535
Target:  5'- aCCACCGUgacgcagGCCACGG--UGCCCgGCa -3'
miRNA:   3'- cGGUGGUAg------UGGUGCUagACGGGgUG- -5'
14611 3' -56.7 NC_003521.1 + 232387 0.66 0.944535
Target:  5'- uCCACCGUC-UCGCGcuggCUGCgCCUGCg -3'
miRNA:   3'- cGGUGGUAGuGGUGCua--GACG-GGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.