miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14611 5' -52.4 NC_003521.1 + 187057 0.66 0.993263
Target:  5'- cGGGCGGGaAGggUGCCAGcGAGCGGa- -3'
miRNA:   3'- -UUUGUCCcUCuuGUGGUC-CUUGUCgu -5'
14611 5' -52.4 NC_003521.1 + 215446 0.66 0.993263
Target:  5'- gGAGCAGGGuGuccgGCGCCgAGGAACcaAGUc -3'
miRNA:   3'- -UUUGUCCCuCu---UGUGG-UCCUUG--UCGu -5'
14611 5' -52.4 NC_003521.1 + 107173 0.66 0.993263
Target:  5'- cAGGCGGGGcAGGu--CCAGcAGCAGCAg -3'
miRNA:   3'- -UUUGUCCC-UCUuguGGUCcUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 92303 0.66 0.993263
Target:  5'- aAGGCGcGGGAGGAgGCgCAGccGCGGCAu -3'
miRNA:   3'- -UUUGU-CCCUCUUgUG-GUCcuUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 213500 0.66 0.992973
Target:  5'- -cACAGGGuGAugACCAGcacauagucggugaGGAUGGCGg -3'
miRNA:   3'- uuUGUCCCuCUugUGGUC--------------CUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 139264 0.66 0.992673
Target:  5'- gGAGCGGGGGGAcgacgACGCCgucgucgucuacgagAcGGAGCuGCAg -3'
miRNA:   3'- -UUUGUCCCUCU-----UGUGG---------------U-CCUUGuCGU- -5'
14611 5' -52.4 NC_003521.1 + 168420 0.66 0.992257
Target:  5'- --cUAGGGcGGGCGgCAGGGccGCGGCGg -3'
miRNA:   3'- uuuGUCCCuCUUGUgGUCCU--UGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 23103 0.66 0.992257
Target:  5'- cGGGCGGGGG----GCCGGG-ACGGCAc -3'
miRNA:   3'- -UUUGUCCCUcuugUGGUCCuUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 131212 0.66 0.992257
Target:  5'- cGAgAGGGGccgGCGCCAGaGACAGCGu -3'
miRNA:   3'- uUUgUCCCUcu-UGUGGUCcUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 70364 0.66 0.992257
Target:  5'- cGGCGGGGuAGAGC-CgCAGGcGGCGGUAg -3'
miRNA:   3'- uUUGUCCC-UCUUGuG-GUCC-UUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 132340 0.66 0.992257
Target:  5'- aGAGCAGGau---CGCCAGGAucauCAGCGa -3'
miRNA:   3'- -UUUGUCCcucuuGUGGUCCUu---GUCGU- -5'
14611 5' -52.4 NC_003521.1 + 165456 0.66 0.99215
Target:  5'- uGGCAGGccuuGAGCACCAGGuggcgucGACGGUc -3'
miRNA:   3'- uUUGUCCcu--CUUGUGGUCC-------UUGUCGu -5'
14611 5' -52.4 NC_003521.1 + 90614 0.66 0.991933
Target:  5'- cAGCAGGcuguGGACcugccagaaggcccGCCGGGAGCGGUAg -3'
miRNA:   3'- uUUGUCCcu--CUUG--------------UGGUCCUUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 37537 0.66 0.991135
Target:  5'- ---gGGGGuGGGCAgCGGGGgucGCGGCGg -3'
miRNA:   3'- uuugUCCCuCUUGUgGUCCU---UGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 70245 0.66 0.991135
Target:  5'- uAGGCAGGGcGAGCuggUgGGGuGCAGCAc -3'
miRNA:   3'- -UUUGUCCCuCUUGu--GgUCCuUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 38544 0.66 0.989889
Target:  5'- cGACAGaGGugGGGACACggcaCAGGuAGCAGCGg -3'
miRNA:   3'- uUUGUC-CC--UCUUGUG----GUCC-UUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 84792 0.66 0.989889
Target:  5'- gAAGCagAGGGAGGGCACgucGGGCAGCu -3'
miRNA:   3'- -UUUG--UCCCUCUUGUGgucCUUGUCGu -5'
14611 5' -52.4 NC_003521.1 + 238771 0.66 0.989889
Target:  5'- cGACAGaGGugGGGACACggcaCAGGuAGCAGCGg -3'
miRNA:   3'- uUUGUC-CC--UCUUGUG----GUCC-UUGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 113354 0.66 0.989078
Target:  5'- --cCAGGGGGAcGgGCCGGGGgcgaggaggaggguuACGGCGg -3'
miRNA:   3'- uuuGUCCCUCU-UgUGGUCCU---------------UGUCGU- -5'
14611 5' -52.4 NC_003521.1 + 91858 0.66 0.988509
Target:  5'- --cCAGGGcGGcGgACCAGGAcgGCGGCGg -3'
miRNA:   3'- uuuGUCCC-UCuUgUGGUCCU--UGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.