Results 1 - 20 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14611 | 5' | -52.4 | NC_003521.1 | + | 187057 | 0.66 | 0.993263 |
Target: 5'- cGGGCGGGaAGggUGCCAGcGAGCGGa- -3' miRNA: 3'- -UUUGUCCcUCuuGUGGUC-CUUGUCgu -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 215446 | 0.66 | 0.993263 |
Target: 5'- gGAGCAGGGuGuccgGCGCCgAGGAACcaAGUc -3' miRNA: 3'- -UUUGUCCCuCu---UGUGG-UCCUUG--UCGu -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 107173 | 0.66 | 0.993263 |
Target: 5'- cAGGCGGGGcAGGu--CCAGcAGCAGCAg -3' miRNA: 3'- -UUUGUCCC-UCUuguGGUCcUUGUCGU- -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 92303 | 0.66 | 0.993263 |
Target: 5'- aAGGCGcGGGAGGAgGCgCAGccGCGGCAu -3' miRNA: 3'- -UUUGU-CCCUCUUgUG-GUCcuUGUCGU- -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 213500 | 0.66 | 0.992973 |
Target: 5'- -cACAGGGuGAugACCAGcacauagucggugaGGAUGGCGg -3' miRNA: 3'- uuUGUCCCuCUugUGGUC--------------CUUGUCGU- -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 139264 | 0.66 | 0.992673 |
Target: 5'- gGAGCGGGGGGAcgacgACGCCgucgucgucuacgagAcGGAGCuGCAg -3' miRNA: 3'- -UUUGUCCCUCU-----UGUGG---------------U-CCUUGuCGU- -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 168420 | 0.66 | 0.992257 |
Target: 5'- --cUAGGGcGGGCGgCAGGGccGCGGCGg -3' miRNA: 3'- uuuGUCCCuCUUGUgGUCCU--UGUCGU- -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 23103 | 0.66 | 0.992257 |
Target: 5'- cGGGCGGGGG----GCCGGG-ACGGCAc -3' miRNA: 3'- -UUUGUCCCUcuugUGGUCCuUGUCGU- -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 131212 | 0.66 | 0.992257 |
Target: 5'- cGAgAGGGGccgGCGCCAGaGACAGCGu -3' miRNA: 3'- uUUgUCCCUcu-UGUGGUCcUUGUCGU- -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 70364 | 0.66 | 0.992257 |
Target: 5'- cGGCGGGGuAGAGC-CgCAGGcGGCGGUAg -3' miRNA: 3'- uUUGUCCC-UCUUGuG-GUCC-UUGUCGU- -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 132340 | 0.66 | 0.992257 |
Target: 5'- aGAGCAGGau---CGCCAGGAucauCAGCGa -3' miRNA: 3'- -UUUGUCCcucuuGUGGUCCUu---GUCGU- -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 165456 | 0.66 | 0.99215 |
Target: 5'- uGGCAGGccuuGAGCACCAGGuggcgucGACGGUc -3' miRNA: 3'- uUUGUCCcu--CUUGUGGUCC-------UUGUCGu -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 90614 | 0.66 | 0.991933 |
Target: 5'- cAGCAGGcuguGGACcugccagaaggcccGCCGGGAGCGGUAg -3' miRNA: 3'- uUUGUCCcu--CUUG--------------UGGUCCUUGUCGU- -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 37537 | 0.66 | 0.991135 |
Target: 5'- ---gGGGGuGGGCAgCGGGGgucGCGGCGg -3' miRNA: 3'- uuugUCCCuCUUGUgGUCCU---UGUCGU- -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 70245 | 0.66 | 0.991135 |
Target: 5'- uAGGCAGGGcGAGCuggUgGGGuGCAGCAc -3' miRNA: 3'- -UUUGUCCCuCUUGu--GgUCCuUGUCGU- -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 38544 | 0.66 | 0.989889 |
Target: 5'- cGACAGaGGugGGGACACggcaCAGGuAGCAGCGg -3' miRNA: 3'- uUUGUC-CC--UCUUGUG----GUCC-UUGUCGU- -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 84792 | 0.66 | 0.989889 |
Target: 5'- gAAGCagAGGGAGGGCACgucGGGCAGCu -3' miRNA: 3'- -UUUG--UCCCUCUUGUGgucCUUGUCGu -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 238771 | 0.66 | 0.989889 |
Target: 5'- cGACAGaGGugGGGACACggcaCAGGuAGCAGCGg -3' miRNA: 3'- uUUGUC-CC--UCUUGUG----GUCC-UUGUCGU- -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 113354 | 0.66 | 0.989078 |
Target: 5'- --cCAGGGGGAcGgGCCGGGGgcgaggaggaggguuACGGCGg -3' miRNA: 3'- uuuGUCCCUCU-UgUGGUCCU---------------UGUCGU- -5' |
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14611 | 5' | -52.4 | NC_003521.1 | + | 91858 | 0.66 | 0.988509 |
Target: 5'- --cCAGGGcGGcGgACCAGGAcgGCGGCGg -3' miRNA: 3'- uuuGUCCC-UCuUgUGGUCCU--UGUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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