miRNA display CGI


Results 21 - 40 of 196 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14614 3' -55.7 NC_003521.1 + 43355 0.71 0.784096
Target:  5'- ----cGCCGCGCGugaacauccgccAGAGCAuGCGCUGGc -3'
miRNA:   3'- ugaacCGGUGCGC------------UUUCGU-CGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 17141 0.71 0.783194
Target:  5'- gACgagUGGUUccagcagcgGCGCGAGGccgaggcGCAGCGCUGGc -3'
miRNA:   3'- -UGa--ACCGG---------UGCGCUUU-------CGUCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 74536 0.72 0.718317
Target:  5'- aACgaGGCCACGCGGAccAGCcGCGCc-- -3'
miRNA:   3'- -UGaaCCGGUGCGCUU--UCGuCGCGacc -5'
14614 3' -55.7 NC_003521.1 + 95794 0.74 0.599049
Target:  5'- cGCUcGGCCACGCGAc--CAGCGCgucGGc -3'
miRNA:   3'- -UGAaCCGGUGCGCUuucGUCGCGa--CC- -5'
14614 3' -55.7 NC_003521.1 + 39199 0.69 0.851307
Target:  5'- uCUUGGUCA-GCGuccgcAGCAGCGCgGGc -3'
miRNA:   3'- uGAACCGGUgCGCuu---UCGUCGCGaCC- -5'
14614 3' -55.7 NC_003521.1 + 236463 0.7 0.818999
Target:  5'- gACgcgGGCCGCgaugaGCGAAccgccGGCGGCGgUGGc -3'
miRNA:   3'- -UGaa-CCGGUG-----CGCUU-----UCGUCGCgACC- -5'
14614 3' -55.7 NC_003521.1 + 171279 0.71 0.756519
Target:  5'- --gUGGCCugcgcuguauccGCGUgggcugGAAGGCGGUGCUGGg -3'
miRNA:   3'- ugaACCGG------------UGCG------CUUUCGUCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 179326 0.75 0.579156
Target:  5'- --gUGGCCACGCGA--GUAGCgGCUGa -3'
miRNA:   3'- ugaACCGGUGCGCUuuCGUCG-CGACc -5'
14614 3' -55.7 NC_003521.1 + 214558 0.7 0.818999
Target:  5'- gACcgGuGCCugGgGugcAGCAGCGCUGGc -3'
miRNA:   3'- -UGaaC-CGGugCgCuu-UCGUCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 212643 0.75 0.559407
Target:  5'- gACUUGGCCAUGCGAcccgaagaGGGCGuCGCgGGc -3'
miRNA:   3'- -UGAACCGGUGCGCU--------UUCGUcGCGaCC- -5'
14614 3' -55.7 NC_003521.1 + 127958 0.71 0.775023
Target:  5'- ---cGGCCAgcCGCGGGAGCA--GCUGGg -3'
miRNA:   3'- ugaaCCGGU--GCGCUUUCGUcgCGACC- -5'
14614 3' -55.7 NC_003521.1 + 114753 0.7 0.810498
Target:  5'- ---gGGUgGCGCGGccaCAGCGCUGGa -3'
miRNA:   3'- ugaaCCGgUGCGCUuucGUCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 13918 0.72 0.737594
Target:  5'- ---gGGCC--GCGGAGGCcGCGCUGGc -3'
miRNA:   3'- ugaaCCGGugCGCUUUCGuCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 98953 0.72 0.718317
Target:  5'- cACUgagGGCCugGUGGcuggugAGGCGGUGCcGGg -3'
miRNA:   3'- -UGAa--CCGGugCGCU------UUCGUCGCGaCC- -5'
14614 3' -55.7 NC_003521.1 + 74752 0.74 0.629047
Target:  5'- cGCUaUGGCCcUGCGGGAGUGGaUGCUGGc -3'
miRNA:   3'- -UGA-ACCGGuGCGCUUUCGUC-GCGACC- -5'
14614 3' -55.7 NC_003521.1 + 199575 0.74 0.609035
Target:  5'- cACgaGGCCACGUucguccccAGCAGUGCUGGu -3'
miRNA:   3'- -UGaaCCGGUGCGcuu-----UCGUCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 39525 0.69 0.873567
Target:  5'- ---gGGUCGCGCGGcgaGAGCuGGCGCaGGu -3'
miRNA:   3'- ugaaCCGGUGCGCU---UUCG-UCGCGaCC- -5'
14614 3' -55.7 NC_003521.1 + 92213 0.69 0.851307
Target:  5'- ---cGGCCGCGCGAcg--AGCGCUGu -3'
miRNA:   3'- ugaaCCGGUGCGCUuucgUCGCGACc -5'
14614 3' -55.7 NC_003521.1 + 155082 0.7 0.843499
Target:  5'- cGCUcaUGGCCAaguuCGCGGcgcugcagGAGCAGgGCgUGGa -3'
miRNA:   3'- -UGA--ACCGGU----GCGCU--------UUCGUCgCG-ACC- -5'
14614 3' -55.7 NC_003521.1 + 203460 0.7 0.827338
Target:  5'- -gUUGGCCACcaaGAAGCAGCGCUc- -3'
miRNA:   3'- ugAACCGGUGcgcUUUCGUCGCGAcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.