Results 21 - 40 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 179436 | 0.66 | 0.967099 |
Target: 5'- uAGUGGUacuccaCCAaCGUGUCCACCagccgcuugACGUACu -3' miRNA: 3'- -UCAUCG------GGUaGUACGGGUGG---------UGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 174737 | 0.67 | 0.956871 |
Target: 5'- gGGcGGCCCAacgCAggGCUCgcucggcuGCCACGUACg -3' miRNA: 3'- -UCaUCGGGUa--GUa-CGGG--------UGGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 173255 | 0.68 | 0.93538 |
Target: 5'- -cUGGCCCG-CGggGCCCGCCGCcugACa -3' miRNA: 3'- ucAUCGGGUaGUa-CGGGUGGUGca-UG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 169141 | 0.71 | 0.828499 |
Target: 5'- --cGGCCUAcggCGUGCUCACCAaGUGCg -3' miRNA: 3'- ucaUCGGGUa--GUACGGGUGGUgCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 166359 | 0.68 | 0.924629 |
Target: 5'- --aAGCCCAggaCGUGCUCGCugaacacggugcgCACGUACu -3' miRNA: 3'- ucaUCGGGUa--GUACGGGUG-------------GUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 166271 | 0.74 | 0.658391 |
Target: 5'- ---cGCCC-UCAgacauacuUGUCCACCACGUACg -3' miRNA: 3'- ucauCGGGuAGU--------ACGGGUGGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 163411 | 0.69 | 0.908087 |
Target: 5'- cGUGGcCCCGUCGucggcugccgcUGCCUACCAgGgUGCc -3' miRNA: 3'- uCAUC-GGGUAGU-----------ACGGGUGGUgC-AUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 156193 | 0.66 | 0.967099 |
Target: 5'- cGGUGGCgCGUCAggaaGCCUacgucgaagggACgACGUGCg -3' miRNA: 3'- -UCAUCGgGUAGUa---CGGG-----------UGgUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 153738 | 0.71 | 0.828499 |
Target: 5'- ---uGCCCAcCGUgGCCCACCaauccACGUACa -3' miRNA: 3'- ucauCGGGUaGUA-CGGGUGG-----UGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 153454 | 0.66 | 0.967099 |
Target: 5'- cGUAGgCCAgcg-GCUCgcagGCCACGUACa -3' miRNA: 3'- uCAUCgGGUaguaCGGG----UGGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 153084 | 0.69 | 0.888938 |
Target: 5'- --gGGCCCGggcCGggGCCCACCACGc-- -3' miRNA: 3'- ucaUCGGGUa--GUa-CGGGUGGUGCaug -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 152743 | 0.66 | 0.967099 |
Target: 5'- gAGUGGCCCGUgGUcacgggcgccGCcgaCCACCGCG-ACc -3' miRNA: 3'- -UCAUCGGGUAgUA----------CG---GGUGGUGCaUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 151804 | 0.7 | 0.844792 |
Target: 5'- aGGUGGCCgGcaCGUGuUCCACCACGUccGCg -3' miRNA: 3'- -UCAUCGGgUa-GUAC-GGGUGGUGCA--UG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 149569 | 0.66 | 0.97548 |
Target: 5'- cGGUuuCCCGccCGUGCCCAuCUACGUGg -3' miRNA: 3'- -UCAucGGGUa-GUACGGGU-GGUGCAUg -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 149263 | 0.67 | 0.960495 |
Target: 5'- cGUGGCCaUGUCGUuccgcgucggcGCCCACaagUACGUGCu -3' miRNA: 3'- uCAUCGG-GUAGUA-----------CGGGUG---GUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 148296 | 0.71 | 0.810639 |
Target: 5'- gGGUAGCCCAggUCGggaaaguUGCUcagCACCAgGUGCa -3' miRNA: 3'- -UCAUCGGGU--AGU-------ACGG---GUGGUgCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 146623 | 0.7 | 0.867797 |
Target: 5'- --gAGCCCGUCGUcgucuucaaggGCCCcgGCCACG-ACg -3' miRNA: 3'- ucaUCGGGUAGUA-----------CGGG--UGGUGCaUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 142571 | 0.66 | 0.972882 |
Target: 5'- --aGGCUCGcCGUGCCCGCCGUGgcCg -3' miRNA: 3'- ucaUCGGGUaGUACGGGUGGUGCauG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 142339 | 0.66 | 0.970091 |
Target: 5'- --cAGCCC-UCGuUGCCCACgACG-ACc -3' miRNA: 3'- ucaUCGGGuAGU-ACGGGUGgUGCaUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 139523 | 0.68 | 0.919705 |
Target: 5'- cGUAGCCgAugcUgAUGCCgAUCAUGUGCu -3' miRNA: 3'- uCAUCGGgU---AgUACGGgUGGUGCAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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