miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14616 3' -57.6 NC_003521.1 + 238444 0.66 0.913848
Target:  5'- ---cGGGCAGgaGGCgcagggCGGCCUCGGc- -3'
miRNA:   3'- cguaCUCGUCg-CCGa-----GCUGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 234852 0.74 0.520926
Target:  5'- aGCGUGGGCAuCGGCgUCGugUUCGGaUGa -3'
miRNA:   3'- -CGUACUCGUcGCCG-AGCugGAGCC-AC- -5'
14616 3' -57.6 NC_003521.1 + 228745 0.68 0.851431
Target:  5'- -gGUGAGCAGCGGCgugcgcaUCuugucggcguagauGACCUCcaGGUGc -3'
miRNA:   3'- cgUACUCGUCGCCG-------AG--------------CUGGAG--CCAC- -5'
14616 3' -57.6 NC_003521.1 + 226367 0.66 0.913848
Target:  5'- cGCggGAGCGGCGGCUgaCGccGCCgcaGGg- -3'
miRNA:   3'- -CGuaCUCGUCGCCGA--GC--UGGag-CCac -5'
14616 3' -57.6 NC_003521.1 + 222678 1.09 0.003224
Target:  5'- aGCAUGAGCAGCGGCUCGACCUCGGUGc -3'
miRNA:   3'- -CGUACUCGUCGCCGAGCUGGAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 220505 0.66 0.913848
Target:  5'- ---aGAGCAGCaGCguggUGGCCUCcuGGUGc -3'
miRNA:   3'- cguaCUCGUCGcCGa---GCUGGAG--CCAC- -5'
14616 3' -57.6 NC_003521.1 + 219079 0.68 0.831131
Target:  5'- uGCAUGAGCAGCGa---GACCuguUCGGg- -3'
miRNA:   3'- -CGUACUCGUCGCcgagCUGG---AGCCac -5'
14616 3' -57.6 NC_003521.1 + 218034 0.66 0.929802
Target:  5'- --uUGGGCGGCGGCggCGuCCgcaGGUa -3'
miRNA:   3'- cguACUCGUCGCCGa-GCuGGag-CCAc -5'
14616 3' -57.6 NC_003521.1 + 217407 0.68 0.861854
Target:  5'- gGC-UGAGCGGCGGCaUGAagcCGGUGc -3'
miRNA:   3'- -CGuACUCGUCGCCGaGCUggaGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 216372 0.66 0.90809
Target:  5'- gGCA-GAGCAGaagGGCU--GCCUCGGg- -3'
miRNA:   3'- -CGUaCUCGUCg--CCGAgcUGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 212964 0.67 0.90028
Target:  5'- gGCucUGAGgauuuaucuuugccCAGCGGCUCGcCCU-GGUGa -3'
miRNA:   3'- -CGu-ACUC--------------GUCGCCGAGCuGGAgCCAC- -5'
14616 3' -57.6 NC_003521.1 + 207442 0.67 0.895924
Target:  5'- ---aGAGCGGCGGCUggCGGCgUgugugagugaCGGUGa -3'
miRNA:   3'- cguaCUCGUCGCCGA--GCUGgA----------GCCAC- -5'
14616 3' -57.6 NC_003521.1 + 207196 0.67 0.902115
Target:  5'- -uGUGAGCcgcucGGCGGCaUCGuCCUcCGGUu -3'
miRNA:   3'- cgUACUCG-----UCGCCG-AGCuGGA-GCCAc -5'
14616 3' -57.6 NC_003521.1 + 200577 0.67 0.88952
Target:  5'- aGCGUGAGCugccggaGGCGGCccugCGACCgcugcccgccucacgCGGg- -3'
miRNA:   3'- -CGUACUCG-------UCGCCGa---GCUGGa--------------GCCac -5'
14616 3' -57.6 NC_003521.1 + 199762 0.66 0.929802
Target:  5'- -gAUGAGCAGguugaGGaa-GGCUUCGGUGg -3'
miRNA:   3'- cgUACUCGUCg----CCgagCUGGAGCCAC- -5'
14616 3' -57.6 NC_003521.1 + 197546 0.67 0.87609
Target:  5'- gGCGgacgaGAGCGGCGGCgagcuccUGAgCUCGGg- -3'
miRNA:   3'- -CGUa----CUCGUCGCCGa------GCUgGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 196999 0.67 0.902115
Target:  5'- cGCGgccGGCGGCGGCU-GACC-CGGcUGc -3'
miRNA:   3'- -CGUac-UCGUCGCCGAgCUGGaGCC-AC- -5'
14616 3' -57.6 NC_003521.1 + 196432 0.66 0.913848
Target:  5'- cCGUGAG-GGUGGaauaacgcacCUCGGCCUCGGg- -3'
miRNA:   3'- cGUACUCgUCGCC----------GAGCUGGAGCCac -5'
14616 3' -57.6 NC_003521.1 + 190543 0.66 0.924704
Target:  5'- gGCGgcAGCAGCGGCg-GACC-CGGcUGc -3'
miRNA:   3'- -CGUacUCGUCGCCGagCUGGaGCC-AC- -5'
14616 3' -57.6 NC_003521.1 + 187783 0.68 0.864764
Target:  5'- aGC-UGGGCuggacccacuucgacAGCGGCggCGACCUgGGUu -3'
miRNA:   3'- -CGuACUCG---------------UCGCCGa-GCUGGAgCCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.