miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14617 3' -53.1 NC_003521.1 + 120687 0.66 0.992971
Target:  5'- cCGUGGAgGUGagccgcaccuCGGUGCUGUGCc-- -3'
miRNA:   3'- -GCAUCUgCAUcu--------GCCACGGCACGaau -5'
14617 3' -53.1 NC_003521.1 + 147063 0.66 0.992971
Target:  5'- ---cGACGUGGugGGagaGCCGgGCUUc -3'
miRNA:   3'- gcauCUGCAUCugCCa--CGGCaCGAAu -5'
14617 3' -53.1 NC_003521.1 + 74404 0.66 0.991955
Target:  5'- aCGU--GCGUGGACGaccuGUGCCGcgGCUa- -3'
miRNA:   3'- -GCAucUGCAUCUGC----CACGGCa-CGAau -5'
14617 3' -53.1 NC_003521.1 + 84913 0.66 0.991955
Target:  5'- aGUAGGCGUAGcCGGccUGCucgcagggCGUGCg-- -3'
miRNA:   3'- gCAUCUGCAUCuGCC--ACG--------GCACGaau -5'
14617 3' -53.1 NC_003521.1 + 184004 0.66 0.990708
Target:  5'- gCGUGGugGguUAGACguucccaccccgaGGUGCCGUcGCg-- -3'
miRNA:   3'- -GCAUCugC--AUCUG-------------CCACGGCA-CGaau -5'
14617 3' -53.1 NC_003521.1 + 178253 0.66 0.990092
Target:  5'- gGUAGGCGgcGGCGuugcugcauugcgacGUGCgGUGCg-- -3'
miRNA:   3'- gCAUCUGCauCUGC---------------CACGgCACGaau -5'
14617 3' -53.1 NC_003521.1 + 196810 0.66 0.989578
Target:  5'- gGUGGGCGaGGGCaG-GCCGUGgUUGa -3'
miRNA:   3'- gCAUCUGCaUCUGcCaCGGCACgAAU- -5'
14617 3' -53.1 NC_003521.1 + 239653 0.66 0.989578
Target:  5'- cCGUccAGuccCGUAGGCGGcGCCGUGgCUc- -3'
miRNA:   3'- -GCA--UCu--GCAUCUGCCaCGGCAC-GAau -5'
14617 3' -53.1 NC_003521.1 + 39426 0.66 0.989578
Target:  5'- cCGUccAGuccCGUAGGCGGcGCCGUGgCUc- -3'
miRNA:   3'- -GCA--UCu--GCAUCUGCCaCGGCAC-GAau -5'
14617 3' -53.1 NC_003521.1 + 128266 0.66 0.989312
Target:  5'- cCGUGGugGgcagcgcguugcGGAUGGUGUCGgucaGCUUGa -3'
miRNA:   3'- -GCAUCugCa-----------UCUGCCACGGCa---CGAAU- -5'
14617 3' -53.1 NC_003521.1 + 43139 0.66 0.988199
Target:  5'- gCGcUGGGCGUGGA-GGUGCaCGcGCUg- -3'
miRNA:   3'- -GC-AUCUGCAUCUgCCACG-GCaCGAau -5'
14617 3' -53.1 NC_003521.1 + 229470 0.67 0.987307
Target:  5'- gCGUGGGCGgguuacgugauUAGACGGUGUggaagcgacgucgaaCGUGCc-- -3'
miRNA:   3'- -GCAUCUGC-----------AUCUGCCACG---------------GCACGaau -5'
14617 3' -53.1 NC_003521.1 + 171297 0.67 0.986683
Target:  5'- gCGUGGGCuggaAGGCGGUGCUGgGCc-- -3'
miRNA:   3'- -GCAUCUGca--UCUGCCACGGCaCGaau -5'
14617 3' -53.1 NC_003521.1 + 128835 0.67 0.986683
Target:  5'- uCGUAGACGgcGAUGGguagcUGCCagaauGUGCg-- -3'
miRNA:   3'- -GCAUCUGCauCUGCC-----ACGG-----CACGaau -5'
14617 3' -53.1 NC_003521.1 + 169647 0.67 0.985022
Target:  5'- uGUGGuCGUAGA-GGUGCCGUuCa-- -3'
miRNA:   3'- gCAUCuGCAUCUgCCACGGCAcGaau -5'
14617 3' -53.1 NC_003521.1 + 228237 0.67 0.983208
Target:  5'- aCGcUGGuCGUGGugGGUGCCGccGUg-- -3'
miRNA:   3'- -GC-AUCuGCAUCugCCACGGCa-CGaau -5'
14617 3' -53.1 NC_003521.1 + 185232 0.67 0.983208
Target:  5'- uGUAcGACGaggAGACGGUGUgGUcGCUg- -3'
miRNA:   3'- gCAU-CUGCa--UCUGCCACGgCA-CGAau -5'
14617 3' -53.1 NC_003521.1 + 155244 0.67 0.983208
Target:  5'- cCGUGGugGUGGugGGggGCgGcgGCg-- -3'
miRNA:   3'- -GCAUCugCAUCugCCa-CGgCa-CGaau -5'
14617 3' -53.1 NC_003521.1 + 199003 0.67 0.983018
Target:  5'- cCGUAucucccuGACGUAGACGGUGUauguUGCa-- -3'
miRNA:   3'- -GCAU-------CUGCAUCUGCCACGgc--ACGaau -5'
14617 3' -53.1 NC_003521.1 + 72541 0.67 0.981232
Target:  5'- aGgcGGCGgcGACGGUGUCGUcGUc-- -3'
miRNA:   3'- gCauCUGCauCUGCCACGGCA-CGaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.