miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14619 3' -49.6 NC_003521.1 + 91031 0.66 0.999719
Target:  5'- gCCGGCcguucgcggaacgccGUGGCGUUGAGGCg------- -3'
miRNA:   3'- -GGCCG---------------CGCCGCAGUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 223180 0.66 0.999692
Target:  5'- cCCGGUGCuGGCGUaCGuAGCUc------ -3'
miRNA:   3'- -GGCCGCG-CCGCA-GUuUCGAauuauau -5'
14619 3' -49.6 NC_003521.1 + 192312 0.66 0.999692
Target:  5'- gCGGUaGCGGCGUCGGcGGCa------- -3'
miRNA:   3'- gGCCG-CGCCGCAGUU-UCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 238226 0.66 0.999692
Target:  5'- gUCGGCaCGGCGUC-GAGCg------- -3'
miRNA:   3'- -GGCCGcGCCGCAGuUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 17425 0.66 0.999692
Target:  5'- gCCGGgGCGccacacggcccGCGUCGGGGCgccgcGAUGUc -3'
miRNA:   3'- -GGCCgCGC-----------CGCAGUUUCGaa---UUAUAu -5'
14619 3' -49.6 NC_003521.1 + 209103 0.66 0.999692
Target:  5'- gUGGcCGCGGCGUCccAGCa------- -3'
miRNA:   3'- gGCC-GCGCCGCAGuuUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 53914 0.66 0.999685
Target:  5'- aCCGGCGCcccccuuGGaCGUCAGguAGCUg---GUGa -3'
miRNA:   3'- -GGCCGCG-------CC-GCAGUU--UCGAauuaUAU- -5'
14619 3' -49.6 NC_003521.1 + 112372 0.66 0.999614
Target:  5'- gCGGCuGCGGCGUCucguccaccuGGCUg------ -3'
miRNA:   3'- gGCCG-CGCCGCAGuu--------UCGAauuauau -5'
14619 3' -49.6 NC_003521.1 + 28862 0.66 0.999614
Target:  5'- gCGGCGCGGCacgGUCGAgucgcccaAGCUc------ -3'
miRNA:   3'- gGCCGCGCCG---CAGUU--------UCGAauuauau -5'
14619 3' -49.6 NC_003521.1 + 111182 0.66 0.999614
Target:  5'- cCCGGCGaCGGCGcCGcggacgguGGGCUgggcGAUGg- -3'
miRNA:   3'- -GGCCGC-GCCGCaGU--------UUCGAa---UUAUau -5'
14619 3' -49.6 NC_003521.1 + 43135 0.66 0.999614
Target:  5'- cUCGGCGCugGGCGUgGAGGUg------- -3'
miRNA:   3'- -GGCCGCG--CCGCAgUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 97126 0.66 0.999519
Target:  5'- -aGGCGCGGCGgu--AGCUg------ -3'
miRNA:   3'- ggCCGCGCCGCaguuUCGAauuauau -5'
14619 3' -49.6 NC_003521.1 + 168363 0.66 0.999519
Target:  5'- gCGGCgcguaGCGGCaGUCGgcGGGCagGAUGUAg -3'
miRNA:   3'- gGCCG-----CGCCG-CAGU--UUCGaaUUAUAU- -5'
14619 3' -49.6 NC_003521.1 + 74756 0.66 0.999519
Target:  5'- aCUGGCGuCGcCGUCGAcguGGCUggAGUAUGa -3'
miRNA:   3'- -GGCCGC-GCcGCAGUU---UCGAa-UUAUAU- -5'
14619 3' -49.6 NC_003521.1 + 107076 0.66 0.999519
Target:  5'- uCCGG-GCGGUGUCGuaGAGU--GAUAUu -3'
miRNA:   3'- -GGCCgCGCCGCAGU--UUCGaaUUAUAu -5'
14619 3' -49.6 NC_003521.1 + 104171 0.66 0.999519
Target:  5'- gCGGCGCGG-GUCGcacGGCgUUGcgGUAg -3'
miRNA:   3'- gGCCGCGCCgCAGUu--UCG-AAUuaUAU- -5'
14619 3' -49.6 NC_003521.1 + 112795 0.66 0.999519
Target:  5'- aCCGcGUGCGGCG-CGAGGUg------- -3'
miRNA:   3'- -GGC-CGCGCCGCaGUUUCGaauuauau -5'
14619 3' -49.6 NC_003521.1 + 193181 0.66 0.999519
Target:  5'- gCCGGCGgGaGCGgCGGAGCgUGAa--- -3'
miRNA:   3'- -GGCCGCgC-CGCaGUUUCGaAUUauau -5'
14619 3' -49.6 NC_003521.1 + 18853 0.66 0.999519
Target:  5'- aCGaGUGCGGCGU-GGAGCUgucGUGUc -3'
miRNA:   3'- gGC-CGCGCCGCAgUUUCGAau-UAUAu -5'
14619 3' -49.6 NC_003521.1 + 171659 0.66 0.999519
Target:  5'- gCGGCG-GGCGUCgGGAGCg------- -3'
miRNA:   3'- gGCCGCgCCGCAG-UUUCGaauuauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.