miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14621 5' -54.9 NC_003521.1 + 207561 0.67 0.948874
Target:  5'- cUGCAcgaUCGCGC-CGGCCugcuGGCGuGUg -3'
miRNA:   3'- cAUGUaa-AGCGUGaGCCGGu---CCGC-CG- -5'
14621 5' -54.9 NC_003521.1 + 206302 0.67 0.956731
Target:  5'- -cGCucg-CGCGuCUCGGCCc-GCGGCc -3'
miRNA:   3'- caUGuaaaGCGU-GAGCCGGucCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 205684 0.66 0.975256
Target:  5'- -cGCGUggCGCACcCGcGCuCAGucGCGGCg -3'
miRNA:   3'- caUGUAaaGCGUGaGC-CG-GUC--CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 205334 0.66 0.972664
Target:  5'- cUACGg--CGCcucCUCGGC--GGCGGCa -3'
miRNA:   3'- cAUGUaaaGCGu--GAGCCGguCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 204931 0.69 0.889436
Target:  5'- aGUGCGUgccgUgGCAC-CGGCCAGcGCGa- -3'
miRNA:   3'- -CAUGUAa---AgCGUGaGCCGGUC-CGCcg -5'
14621 5' -54.9 NC_003521.1 + 204881 0.7 0.86115
Target:  5'- -cGC-UUUCGCGaUUGGCCGcGCGGCg -3'
miRNA:   3'- caUGuAAAGCGUgAGCCGGUcCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 204630 0.75 0.621263
Target:  5'- -aGCGUUUgaGcCGCUCGGCCAGGUgcgugGGCa -3'
miRNA:   3'- caUGUAAAg-C-GUGAGCCGGUCCG-----CCG- -5'
14621 5' -54.9 NC_003521.1 + 201387 0.72 0.77747
Target:  5'- -gGCGc--CGgGCUCGGCCGGcaGCGGCa -3'
miRNA:   3'- caUGUaaaGCgUGAGCCGGUC--CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 199663 0.66 0.969882
Target:  5'- -aGCAgagUCGCGua-GGCCAGuagucGCGGCg -3'
miRNA:   3'- caUGUaa-AGCGUgagCCGGUC-----CGCCG- -5'
14621 5' -54.9 NC_003521.1 + 197866 0.78 0.447881
Target:  5'- -gGCGggUCGCGCUCgcugGGCugCAGGCGGCa -3'
miRNA:   3'- caUGUaaAGCGUGAG----CCG--GUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 197441 0.66 0.969882
Target:  5'- --------gGC-CaUGGCCAGGCGGCg -3'
miRNA:   3'- cauguaaagCGuGaGCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 197162 0.68 0.930461
Target:  5'- ---aGUUcCGCGCUgGGCCuggcagggcuggAGGCGGUg -3'
miRNA:   3'- caugUAAaGCGUGAgCCGG------------UCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 196423 0.7 0.868533
Target:  5'- -cACAgacagUCGCugUCGcCCGGGuCGGCc -3'
miRNA:   3'- caUGUaa---AGCGugAGCcGGUCC-GCCG- -5'
14621 5' -54.9 NC_003521.1 + 194140 0.68 0.939662
Target:  5'- -aGCG-UUCGCAucuccacCUCGG-CGGGCGGUu -3'
miRNA:   3'- caUGUaAAGCGU-------GAGCCgGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 192969 0.66 0.975256
Target:  5'- -aGCA---UGUuCUCGGCCAcGGCGGg -3'
miRNA:   3'- caUGUaaaGCGuGAGCCGGU-CCGCCg -5'
14621 5' -54.9 NC_003521.1 + 191003 0.7 0.86115
Target:  5'- cUGCAcggCGCACUgcaCGGCgcccagccauuCGGGCGGCa -3'
miRNA:   3'- cAUGUaaaGCGUGA---GCCG-----------GUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 187870 0.67 0.948874
Target:  5'- uUGCAUggCGguCaccaccucgggCGGCaCGGGCGGCg -3'
miRNA:   3'- cAUGUAaaGCguGa----------GCCG-GUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 186651 0.67 0.948874
Target:  5'- -gACG--UCGCGCggcggUGGCgGaGGCGGCg -3'
miRNA:   3'- caUGUaaAGCGUGa----GCCGgU-CCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 184020 0.71 0.804254
Target:  5'- -gACucgUUCGCGCgcgacgcCGGUUGGGCGGCc -3'
miRNA:   3'- caUGua-AAGCGUGa------GCCGGUCCGCCG- -5'
14621 5' -54.9 NC_003521.1 + 181727 0.66 0.975256
Target:  5'- -gACGcg-CGCACgcuGGCCAaGCGGCc -3'
miRNA:   3'- caUGUaaaGCGUGag-CCGGUcCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.