miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14623 3' -57.7 NC_003521.1 + 196430 0.66 0.9078
Target:  5'- aGUcGCUGUCGCCCGgguCGGccGGCuGCCGc -3'
miRNA:   3'- gCA-CGACGGCGGGUau-GUC--UCG-UGGU- -5'
14623 3' -57.7 NC_003521.1 + 196294 0.66 0.889033
Target:  5'- gCGUGCcggGCCGCuugaugcuggCCAUGCAGcGCAUgGg -3'
miRNA:   3'- -GCACGa--CGGCG----------GGUAUGUCuCGUGgU- -5'
14623 3' -57.7 NC_003521.1 + 188165 0.66 0.9078
Target:  5'- cCGcUGCUGCCGCUCucugaagcGUGCcgcGAGgGCCGa -3'
miRNA:   3'- -GC-ACGACGGCGGG--------UAUGu--CUCgUGGU- -5'
14623 3' -57.7 NC_003521.1 + 80 0.66 0.889033
Target:  5'- gCGUGUcgcuUGCCGCgggCGUGCAGGGagGCCGa -3'
miRNA:   3'- -GCACG----ACGGCGg--GUAUGUCUCg-UGGU- -5'
14623 3' -57.7 NC_003521.1 + 88529 0.66 0.896141
Target:  5'- cCGUGCaggcgcaccgaaacgGCCuCCUcgggGCAGGGCACCAg -3'
miRNA:   3'- -GCACGa--------------CGGcGGGua--UGUCUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 40920 0.66 0.889033
Target:  5'- --gGCggggGCgGCCCGgg-GGAGCGCCAu -3'
miRNA:   3'- gcaCGa---CGgCGGGUaugUCUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 42947 0.66 0.913045
Target:  5'- --cGCUGCCGCCU--GCAgcccagcGAGCGCg- -3'
miRNA:   3'- gcaCGACGGCGGGuaUGU-------CUCGUGgu -5'
14623 3' -57.7 NC_003521.1 + 216460 0.66 0.895506
Target:  5'- --aGCgaaGCCGCCCAggGCAGA-UACCGc -3'
miRNA:   3'- gcaCGa--CGGCGGGUa-UGUCUcGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 102000 0.66 0.889033
Target:  5'- cCGUaGCcGCCGCCau--CAGGcGCGCCAu -3'
miRNA:   3'- -GCA-CGaCGGCGGguauGUCU-CGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 87167 0.66 0.919211
Target:  5'- uCGUGC-GCgCGgCCGUGCAGcGCuCCAc -3'
miRNA:   3'- -GCACGaCG-GCgGGUAUGUCuCGuGGU- -5'
14623 3' -57.7 NC_003521.1 + 21752 0.66 0.889033
Target:  5'- gGU-CUcGCUGCUCAUGCAccuGGGCGCCGu -3'
miRNA:   3'- gCAcGA-CGGCGGGUAUGU---CUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 240629 0.66 0.889033
Target:  5'- gCGUGUcgcuUGCCGCgggCGUGCAGGGagGCCGa -3'
miRNA:   3'- -GCACG----ACGGCGg--GUAUGUCUCg-UGGU- -5'
14623 3' -57.7 NC_003521.1 + 40402 0.66 0.889033
Target:  5'- gCGUGUcgcuUGCCGCgggCGUGCAGGGagGCCGa -3'
miRNA:   3'- -GCACG----ACGGCGg--GUAUGUCUCg-UGGU- -5'
14623 3' -57.7 NC_003521.1 + 1580 0.66 0.888374
Target:  5'- cCGUcGCUGCUGacggCCGUGCAGcgccacauccaccAGCGCCu -3'
miRNA:   3'- -GCA-CGACGGCg---GGUAUGUC-------------UCGUGGu -5'
14623 3' -57.7 NC_003521.1 + 129986 0.66 0.913617
Target:  5'- cCGUcGCUGCCGCUgcgCcgGCGGcGGCGCgCAa -3'
miRNA:   3'- -GCA-CGACGGCGG---GuaUGUC-UCGUG-GU- -5'
14623 3' -57.7 NC_003521.1 + 201807 0.66 0.888374
Target:  5'- cCGUcGCUGCUGacggCCGUGCAGcgccacauccaccAGCGCCu -3'
miRNA:   3'- -GCA-CGACGGCg---GGUAUGUC-------------UCGUGGu -5'
14623 3' -57.7 NC_003521.1 + 86699 0.66 0.919211
Target:  5'- --cGCUGCCGCCCuUGCccggccgcgAGAuGgGCCGg -3'
miRNA:   3'- gcaCGACGGCGGGuAUG---------UCU-CgUGGU- -5'
14623 3' -57.7 NC_003521.1 + 6682 0.66 0.889033
Target:  5'- uCGUGCUGCagggccugCGCCC--GC-GAGCGCUg -3'
miRNA:   3'- -GCACGACG--------GCGGGuaUGuCUCGUGGu -5'
14623 3' -57.7 NC_003521.1 + 88206 0.66 0.889033
Target:  5'- -cUGC-GCCGCCUGgugaccaacCAGGGCGCCGa -3'
miRNA:   3'- gcACGaCGGCGGGUau-------GUCUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 123517 0.66 0.914186
Target:  5'- --cGCUGCCGCCCGcaauccgcgucgcuUcgaacgucaguucggGCAGgugcAGCGCCAg -3'
miRNA:   3'- gcaCGACGGCGGGU--------------A---------------UGUC----UCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.