miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14623 3' -57.7 NC_003521.1 + 224941 1.09 0.003128
Target:  5'- gCGUGCUGCCGCCCAUACAGAGCACCAg -3'
miRNA:   3'- -GCACGACGGCGGGUAUGUCUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 49802 0.79 0.25237
Target:  5'- --cGCUGCCGCCCGaaugGCuGGGCGCCGu -3'
miRNA:   3'- gcaCGACGGCGGGUa---UGuCUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 136660 0.77 0.331015
Target:  5'- cCGUGCgacccgcGCCGCCgccGCAGAGCACCGa -3'
miRNA:   3'- -GCACGa------CGGCGGguaUGUCUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 106318 0.77 0.345007
Target:  5'- cCGUGCgcaucGCCuGCCUcauccgccagagcGUGCAGAGCACCAa -3'
miRNA:   3'- -GCACGa----CGG-CGGG-------------UAUGUCUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 138021 0.76 0.392738
Target:  5'- -uUGCUGCCGCCCGagcugGCGGccgccGGCGCCGu -3'
miRNA:   3'- gcACGACGGCGGGUa----UGUC-----UCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 48471 0.75 0.426281
Target:  5'- -----cGCCGCCCGUGC-GAGCACCGa -3'
miRNA:   3'- gcacgaCGGCGGGUAUGuCUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 204186 0.75 0.443678
Target:  5'- aCGUGC-GCCuuccaGUCCAUGCAGGcGCACCAc -3'
miRNA:   3'- -GCACGaCGG-----CGGGUAUGUCU-CGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 118183 0.74 0.488836
Target:  5'- aGgacCUGCUGCCCAUGCGgcuguuGAGCGCCGa -3'
miRNA:   3'- gCac-GACGGCGGGUAUGU------CUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 98870 0.73 0.536033
Target:  5'- -cUGCUaccGCCGCUCGUGCuagGGGGCGCCGu -3'
miRNA:   3'- gcACGA---CGGCGGGUAUG---UCUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 80147 0.72 0.574896
Target:  5'- gGUGCUGCgCGUCCAgccGCuGGAGgGCCAg -3'
miRNA:   3'- gCACGACG-GCGGGUa--UG-UCUCgUGGU- -5'
14623 3' -57.7 NC_003521.1 + 104213 0.72 0.578822
Target:  5'- aCGUGCUGCUgcaGCCCAgcgaggacguggagcUGCGcGAGCugCAg -3'
miRNA:   3'- -GCACGACGG---CGGGU---------------AUGU-CUCGugGU- -5'
14623 3' -57.7 NC_003521.1 + 212845 0.72 0.614366
Target:  5'- --cGCUGCCGCCgugGCcguGAGCGCCGc -3'
miRNA:   3'- gcaCGACGGCGGguaUGu--CUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 209856 0.72 0.614366
Target:  5'- --aGCUGCUGCUgCGUGCcGAGCGCCu -3'
miRNA:   3'- gcaCGACGGCGG-GUAUGuCUCGUGGu -5'
14623 3' -57.7 NC_003521.1 + 16269 0.71 0.644122
Target:  5'- --cGCUGCCGCUgGUuccuGCuGGGCGCCGu -3'
miRNA:   3'- gcaCGACGGCGGgUA----UGuCUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 145243 0.71 0.644122
Target:  5'- uCGUGagcgGCUGCCU--GCAGGGCGCCu -3'
miRNA:   3'- -GCACga--CGGCGGGuaUGUCUCGUGGu -5'
14623 3' -57.7 NC_003521.1 + 25173 0.71 0.654032
Target:  5'- uCGcUGCUcccGCCGCgaCCAUGCGGAGCcCCGu -3'
miRNA:   3'- -GC-ACGA---CGGCG--GGUAUGUCUCGuGGU- -5'
14623 3' -57.7 NC_003521.1 + 181308 0.71 0.654032
Target:  5'- --aGCUcagGCCGCCCGcgggcCAGGGCGCCGu -3'
miRNA:   3'- gcaCGA---CGGCGGGUau---GUCUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 90843 0.71 0.673797
Target:  5'- gGUGCgcGCCGCCCGUGCu--GCugCu -3'
miRNA:   3'- gCACGa-CGGCGGGUAUGucuCGugGu -5'
14623 3' -57.7 NC_003521.1 + 164977 0.7 0.692455
Target:  5'- aCGUGCUGUCGCCCAUcuuccccgAGGGCgagaucgGCCGc -3'
miRNA:   3'- -GCACGACGGCGGGUAug------UCUCG-------UGGU- -5'
14623 3' -57.7 NC_003521.1 + 130354 0.7 0.693433
Target:  5'- aCGUGCgGCCGCaggcgCCGUGCGcgcucAGCGCCAc -3'
miRNA:   3'- -GCACGaCGGCG-----GGUAUGUc----UCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.