miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14623 3' -57.7 NC_003521.1 + 80 0.66 0.889033
Target:  5'- gCGUGUcgcuUGCCGCgggCGUGCAGGGagGCCGa -3'
miRNA:   3'- -GCACG----ACGGCGg--GUAUGUCUCg-UGGU- -5'
14623 3' -57.7 NC_003521.1 + 1149 0.67 0.868355
Target:  5'- --cGCUGCCGuCCCcgGgAGccacGGCGCCGc -3'
miRNA:   3'- gcaCGACGGC-GGGuaUgUC----UCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 1580 0.66 0.888374
Target:  5'- cCGUcGCUGCUGacggCCGUGCAGcgccacauccaccAGCGCCu -3'
miRNA:   3'- -GCA-CGACGGCg---GGUAUGUC-------------UCGUGGu -5'
14623 3' -57.7 NC_003521.1 + 4320 0.69 0.787397
Target:  5'- cCGgggGCUcGaCCGUCCAUGCcuGGCGCCAc -3'
miRNA:   3'- -GCa--CGA-C-GGCGGGUAUGucUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 6072 0.69 0.787397
Target:  5'- gCGUGaucacGCCaGCCguUGCAGAGgCACCAa -3'
miRNA:   3'- -GCACga---CGG-CGGguAUGUCUC-GUGGU- -5'
14623 3' -57.7 NC_003521.1 + 6682 0.66 0.889033
Target:  5'- uCGUGCUGCagggccugCGCCC--GC-GAGCGCUg -3'
miRNA:   3'- -GCACGACG--------GCGGGuaUGuCUCGUGGu -5'
14623 3' -57.7 NC_003521.1 + 12404 0.68 0.821775
Target:  5'- uCGUGCUGCUGgCUGacCGGGGCugCGu -3'
miRNA:   3'- -GCACGACGGCgGGUauGUCUCGugGU- -5'
14623 3' -57.7 NC_003521.1 + 14685 0.67 0.845106
Target:  5'- aGUGCcGCCGCUgGUGguGGggcauccGCGCCAa -3'
miRNA:   3'- gCACGaCGGCGGgUAUguCU-------CGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 16087 0.68 0.813404
Target:  5'- aCGcGCUgGCCGCCUgcgucgGC-GAGCACCAc -3'
miRNA:   3'- -GCaCGA-CGGCGGGua----UGuCUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 16269 0.71 0.644122
Target:  5'- --cGCUGCCGCUgGUuccuGCuGGGCGCCGu -3'
miRNA:   3'- gcaCGACGGCGGgUA----UGuCUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 16793 0.7 0.732062
Target:  5'- -aUGCUGCCggcGCCCAuUAUGGGGCGCa- -3'
miRNA:   3'- gcACGACGG---CGGGU-AUGUCUCGUGgu -5'
14623 3' -57.7 NC_003521.1 + 20632 0.66 0.895506
Target:  5'- uGUGCUcggagaGCCGCgCGcUGguGGGCGCCu -3'
miRNA:   3'- gCACGA------CGGCGgGU-AUguCUCGUGGu -5'
14623 3' -57.7 NC_003521.1 + 21752 0.66 0.889033
Target:  5'- gGU-CUcGCUGCUCAUGCAccuGGGCGCCGu -3'
miRNA:   3'- gCAcGA-CGGCGGGUAUGU---CUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 23371 0.7 0.741537
Target:  5'- gGUGCUGgccuucCCGCaCC-UGgAGAGCACCGu -3'
miRNA:   3'- gCACGAC------GGCG-GGuAUgUCUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 25173 0.71 0.654032
Target:  5'- uCGcUGCUcccGCCGCgaCCAUGCGGAGCcCCGu -3'
miRNA:   3'- -GC-ACGA---CGGCG--GGUAUGUCUCGuGGU- -5'
14623 3' -57.7 NC_003521.1 + 26265 0.67 0.882348
Target:  5'- --cGCUGCUGCaCCAc-CAG-GCACCGg -3'
miRNA:   3'- gcaCGACGGCG-GGUauGUCuCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 32906 0.69 0.750923
Target:  5'- cCGUGCccGCCGCCCccgGCGuagguGGCGCCGg -3'
miRNA:   3'- -GCACGa-CGGCGGGua-UGUc----UCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 33622 0.68 0.813404
Target:  5'- -uUGCUGUCGCCCAgcaACAGgccguggaggGGCgGCCAg -3'
miRNA:   3'- gcACGACGGCGGGUa--UGUC----------UCG-UGGU- -5'
14623 3' -57.7 NC_003521.1 + 35487 0.67 0.882348
Target:  5'- --aGCUGCCGCCgCcgAgGaGGCGCCGu -3'
miRNA:   3'- gcaCGACGGCGG-GuaUgUcUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 35899 0.7 0.722506
Target:  5'- aCGUGCUGCCuCUCAUucagagacuGguGGGCGCCu -3'
miRNA:   3'- -GCACGACGGcGGGUA---------UguCUCGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.