miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14623 3' -57.7 NC_003521.1 + 121244 0.68 0.80488
Target:  5'- uGUGCUGuCCGCUCAUcaGCAG-GUugCu -3'
miRNA:   3'- gCACGAC-GGCGGGUA--UGUCuCGugGu -5'
14623 3' -57.7 NC_003521.1 + 59339 0.7 0.732062
Target:  5'- aCGUGCUGagccaCGCCaCGcUGCAGGcggcGCGCCAg -3'
miRNA:   3'- -GCACGACg----GCGG-GU-AUGUCU----CGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 63096 0.7 0.732062
Target:  5'- gCGcGCUGcCCGCCCuc-CAGcAGUACCAg -3'
miRNA:   3'- -GCaCGAC-GGCGGGuauGUC-UCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 60682 0.69 0.750923
Target:  5'- uCGUGCUGCgGCCgc-GCGGGGgACCc -3'
miRNA:   3'- -GCACGACGgCGGguaUGUCUCgUGGu -5'
14623 3' -57.7 NC_003521.1 + 32906 0.69 0.750923
Target:  5'- cCGUGCccGCCGCCCccgGCGuagguGGCGCCGg -3'
miRNA:   3'- -GCACGa-CGGCGGGua-UGUc----UCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 225899 0.69 0.760209
Target:  5'- --cGCUGCCGCUCGcGCucgaAGCGCCGg -3'
miRNA:   3'- gcaCGACGGCGGGUaUGuc--UCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 92745 0.69 0.778455
Target:  5'- cCGU-CUGCCuGCCCGUAUAcgcacaucccGGGCACCc -3'
miRNA:   3'- -GCAcGACGG-CGGGUAUGU----------CUCGUGGu -5'
14623 3' -57.7 NC_003521.1 + 4320 0.69 0.787397
Target:  5'- cCGgggGCUcGaCCGUCCAUGCcuGGCGCCAc -3'
miRNA:   3'- -GCa--CGA-C-GGCGGGUAUGucUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 111173 0.69 0.787397
Target:  5'- --cGCgGCCGCCCcgGCGacGGCGCCGc -3'
miRNA:   3'- gcaCGaCGGCGGGuaUGUc-UCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 16793 0.7 0.732062
Target:  5'- -aUGCUGCCggcGCCCAuUAUGGGGCGCa- -3'
miRNA:   3'- gcACGACGG---CGGGU-AUGUCUCGUGgu -5'
14623 3' -57.7 NC_003521.1 + 225779 0.7 0.722506
Target:  5'- uCGcGCUcgcGCCGCUCGU-CAGGGUGCCAg -3'
miRNA:   3'- -GCaCGA---CGGCGGGUAuGUCUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 43170 0.7 0.722506
Target:  5'- --cGCUGCUGCC---GCAcGAGCGCCAc -3'
miRNA:   3'- gcaCGACGGCGGguaUGU-CUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 136660 0.77 0.331015
Target:  5'- cCGUGCgacccgcGCCGCCgccGCAGAGCACCGa -3'
miRNA:   3'- -GCACGa------CGGCGGguaUGUCUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 204186 0.75 0.443678
Target:  5'- aCGUGC-GCCuuccaGUCCAUGCAGGcGCACCAc -3'
miRNA:   3'- -GCACGaCGG-----CGGGUAUGUCU-CGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 98870 0.73 0.536033
Target:  5'- -cUGCUaccGCCGCUCGUGCuagGGGGCGCCGu -3'
miRNA:   3'- gcACGA---CGGCGGGUAUG---UCUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 80147 0.72 0.574896
Target:  5'- gGUGCUGCgCGUCCAgccGCuGGAGgGCCAg -3'
miRNA:   3'- gCACGACG-GCGGGUa--UG-UCUCgUGGU- -5'
14623 3' -57.7 NC_003521.1 + 104213 0.72 0.578822
Target:  5'- aCGUGCUGCUgcaGCCCAgcgaggacguggagcUGCGcGAGCugCAg -3'
miRNA:   3'- -GCACGACGG---CGGGU---------------AUGU-CUCGugGU- -5'
14623 3' -57.7 NC_003521.1 + 145243 0.71 0.644122
Target:  5'- uCGUGagcgGCUGCCU--GCAGGGCGCCu -3'
miRNA:   3'- -GCACga--CGGCGGGuaUGUCUCGUGGu -5'
14623 3' -57.7 NC_003521.1 + 181308 0.71 0.654032
Target:  5'- --aGCUcagGCCGCCCGcgggcCAGGGCGCCGu -3'
miRNA:   3'- gcaCGA---CGGCGGGUau---GUCUCGUGGU- -5'
14623 3' -57.7 NC_003521.1 + 130354 0.7 0.693433
Target:  5'- aCGUGCgGCCGCaggcgCCGUGCGcgcucAGCGCCAc -3'
miRNA:   3'- -GCACGaCGGCG-----GGUAUGUc----UCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.