Results 1 - 20 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14625 | 5' | -55.8 | NC_003521.1 | + | 225536 | 0.98 | 0.029509 |
Target: 5'- cGUCGACGAACGC-UCGUCACCAGGCAg -3' miRNA: 3'- -CAGCUGCUUGCGcAGCAGUGGUCCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 169453 | 0.84 | 0.201072 |
Target: 5'- cGUCGGCGGcgGCGgGuUCGUCGCCAGGCGc -3' miRNA: 3'- -CAGCUGCU--UGCgC-AGCAGUGGUCCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 90910 | 0.77 | 0.47261 |
Target: 5'- cGUCGGCGucgGUGUUGUUGCCGGGCAa -3' miRNA: 3'- -CAGCUGCuugCGCAGCAGUGGUCCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 196908 | 0.75 | 0.55725 |
Target: 5'- gGUCGGgacgaaaguUGAGCGCGUCGUCcACC-GGCAg -3' miRNA: 3'- -CAGCU---------GCUUGCGCAGCAG-UGGuCCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 130752 | 0.75 | 0.606171 |
Target: 5'- uGUCGGCGGGCGCGagCGccgCGCCGGGgGa -3' miRNA: 3'- -CAGCUGCUUGCGCa-GCa--GUGGUCCgU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 105569 | 0.73 | 0.675206 |
Target: 5'- cGUCGGCGuccgccgcCGUGUCGUCGCCGccgccGGCGc -3' miRNA: 3'- -CAGCUGCuu------GCGCAGCAGUGGU-----CCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 182027 | 0.73 | 0.684998 |
Target: 5'- cUCGAgacCGucuAUGCGUCGUCGCCGGcGCGc -3' miRNA: 3'- cAGCU---GCu--UGCGCAGCAGUGGUC-CGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 104027 | 0.72 | 0.720808 |
Target: 5'- cGUCGGCGGGCaGCGUgaccgugagcccgcUGUCGCgCAGGUAg -3' miRNA: 3'- -CAGCUGCUUG-CGCA--------------GCAGUG-GUCCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 145277 | 0.72 | 0.72272 |
Target: 5'- cUCGGCGGccagcucGCGCGccggCGUCucGCCGGGCAu -3' miRNA: 3'- cAGCUGCU-------UGCGCa---GCAG--UGGUCCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 43125 | 0.72 | 0.733181 |
Target: 5'- -gCGGCGAGCGC-UCGgCGCUGGGCGu -3' miRNA: 3'- caGCUGCUUGCGcAGCaGUGGUCCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 100100 | 0.72 | 0.742606 |
Target: 5'- -cCGACGAggacucGCGCGggaugacguUCGUCACCAGGa- -3' miRNA: 3'- caGCUGCU------UGCGC---------AGCAGUGGUCCgu -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 220649 | 0.72 | 0.751012 |
Target: 5'- cGUCGcgacGCGGAC-CGUCGUCGCCGucgucucGGCAc -3' miRNA: 3'- -CAGC----UGCUUGcGCAGCAGUGGU-------CCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 113775 | 0.71 | 0.779323 |
Target: 5'- cGUCGACGAcggcgacggccaGCGCGaCGggCACCGcGGCGg -3' miRNA: 3'- -CAGCUGCU------------UGCGCaGCa-GUGGU-CCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 164545 | 0.71 | 0.779323 |
Target: 5'- uUCGACGAcCGCGagGUCuCgCAGGCGg -3' miRNA: 3'- cAGCUGCUuGCGCagCAGuG-GUCCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 138637 | 0.71 | 0.788216 |
Target: 5'- --aGACGAagccaaACGCGUCGUCAUCaagggagacgGGGCGg -3' miRNA: 3'- cagCUGCU------UGCGCAGCAGUGG----------UCCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 149179 | 0.71 | 0.8056 |
Target: 5'- cUCGGC--GCGCGUCGcCACC-GGCGg -3' miRNA: 3'- cAGCUGcuUGCGCAGCaGUGGuCCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 138015 | 0.71 | 0.814076 |
Target: 5'- cGUCGAgGuGCGCGUgCGUCgcuGCCGGcGCAc -3' miRNA: 3'- -CAGCUgCuUGCGCA-GCAG---UGGUC-CGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 142475 | 0.71 | 0.814076 |
Target: 5'- gGUCGAaac-CGCGUCGUCucuGCCAGcGCAa -3' miRNA: 3'- -CAGCUgcuuGCGCAGCAG---UGGUC-CGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 86661 | 0.7 | 0.819918 |
Target: 5'- -cCGACGAcagguugaggaucaGCGCGUCGUCguaucuggcggGCCGcGGCGg -3' miRNA: 3'- caGCUGCU--------------UGCGCAGCAG-----------UGGU-CCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 210889 | 0.7 | 0.822398 |
Target: 5'- cGUCGccuCGGugGC--CGUCGCCAGGCc -3' miRNA: 3'- -CAGCu--GCUugCGcaGCAGUGGUCCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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