Results 21 - 40 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14625 | 5' | -55.8 | NC_003521.1 | + | 210889 | 0.7 | 0.822398 |
Target: 5'- cGUCGccuCGGugGC--CGUCGCCAGGCc -3' miRNA: 3'- -CAGCu--GCUugCGcaGCAGUGGUCCGu -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 216622 | 0.7 | 0.829751 |
Target: 5'- aGUCGACGGuaggcggGCGCGcCGaCGCCGGGa- -3' miRNA: 3'- -CAGCUGCU-------UGCGCaGCaGUGGUCCgu -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 77247 | 0.7 | 0.830559 |
Target: 5'- cGUCGGCGGgguccACGgGguacUCGcCGCCGGGCAc -3' miRNA: 3'- -CAGCUGCU-----UGCgC----AGCaGUGGUCCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 182371 | 0.7 | 0.838553 |
Target: 5'- gGUCGACGugguGCGCGgaaaGuUCGCCcGGCAg -3' miRNA: 3'- -CAGCUGCu---UGCGCag--C-AGUGGuCCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 126789 | 0.7 | 0.853252 |
Target: 5'- gGUCGAggaggaGAGCGCGacggucaUCGgUACCAGGCAg -3' miRNA: 3'- -CAGCUg-----CUUGCGC-------AGCaGUGGUCCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 5542 | 0.7 | 0.854008 |
Target: 5'- aGUUGGCG-GCGCGUCGUuccucccggUugCGGGCu -3' miRNA: 3'- -CAGCUGCuUGCGCAGCA---------GugGUCCGu -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 164970 | 0.7 | 0.854008 |
Target: 5'- -gUGACGAACGUGcUGUCGCCcaucuuccccgaGGGCGa -3' miRNA: 3'- caGCUGCUUGCGCaGCAGUGG------------UCCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 17546 | 0.7 | 0.854008 |
Target: 5'- aGUUGcGCGAACGCaUCGUCACCGaucuGCAg -3' miRNA: 3'- -CAGC-UGCUUGCGcAGCAGUGGUc---CGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 224084 | 0.7 | 0.854008 |
Target: 5'- -cCGGCGGGCGCG-CG-CGCC-GGCGg -3' miRNA: 3'- caGCUGCUUGCGCaGCaGUGGuCCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 116369 | 0.7 | 0.861458 |
Target: 5'- -gCGGCGAACGCGU-GcCGCCGcGGCc -3' miRNA: 3'- caGCUGCUUGCGCAgCaGUGGU-CCGu -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 209807 | 0.7 | 0.861458 |
Target: 5'- -aCcACGAACGCGUCcUCGCCGGcGCc -3' miRNA: 3'- caGcUGCUUGCGCAGcAGUGGUC-CGu -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 168978 | 0.69 | 0.868714 |
Target: 5'- uGUCGcCGAcGCGCGUCGgUCGCgggAGGCGg -3' miRNA: 3'- -CAGCuGCU-UGCGCAGC-AGUGg--UCCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 99245 | 0.69 | 0.871562 |
Target: 5'- -cUGACGGugcGCGCGUCGUCGCgCgcgagguccagacagAGGCGg -3' miRNA: 3'- caGCUGCU---UGCGCAGCAGUG-G---------------UCCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 171041 | 0.69 | 0.875773 |
Target: 5'- cUCGACGGcCGCucccUCGUCGCCGuGGUAu -3' miRNA: 3'- cAGCUGCUuGCGc---AGCAGUGGU-CCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 54312 | 0.69 | 0.881952 |
Target: 5'- --aGAgcAGCGCGUCGugcuccgUCACCAGGCGc -3' miRNA: 3'- cagCUgcUUGCGCAGC-------AGUGGUCCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 134144 | 0.69 | 0.889278 |
Target: 5'- --aGugGAugGCGugcaucUCGUCGCaCAGGUAg -3' miRNA: 3'- cagCugCUugCGC------AGCAGUG-GUCCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 232279 | 0.69 | 0.889278 |
Target: 5'- -gUGACGGugGaUGUCGUCGcgcccacgguCCGGGCAc -3' miRNA: 3'- caGCUGCUugC-GCAGCAGU----------GGUCCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 95815 | 0.69 | 0.889278 |
Target: 5'- cGUCGGCGAugucgGCGCG-CGagGCCucgguGGCAu -3' miRNA: 3'- -CAGCUGCU-----UGCGCaGCagUGGu----CCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 127116 | 0.69 | 0.889278 |
Target: 5'- --aGugGAagagcaGCGCGUCGUgCACCuccAGGCGg -3' miRNA: 3'- cagCugCU------UGCGCAGCA-GUGG---UCCGU- -5' |
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14625 | 5' | -55.8 | NC_003521.1 | + | 211568 | 0.69 | 0.889278 |
Target: 5'- -aUGAaGAGCGCugGUCGUCGCCGcGGCu -3' miRNA: 3'- caGCUgCUUGCG--CAGCAGUGGU-CCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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