miRNA display CGI


Results 41 - 60 of 120 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14625 5' -55.8 NC_003521.1 + 104577 0.69 0.895716
Target:  5'- cGUCGGCGuAGCggccgGCGUgCGUCAUgAGGUAg -3'
miRNA:   3'- -CAGCUGC-UUG-----CGCA-GCAGUGgUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 122242 0.69 0.895716
Target:  5'- -gCGACuGAGCGCcgccaCGUCGCUGGGCGu -3'
miRNA:   3'- caGCUG-CUUGCGca---GCAGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 215754 0.69 0.895716
Target:  5'- -cCGACG-ACGCGUUGcCGCUgaaGGGCGc -3'
miRNA:   3'- caGCUGCuUGCGCAGCaGUGG---UCCGU- -5'
14625 5' -55.8 NC_003521.1 + 105106 0.68 0.901939
Target:  5'- -gCGGCGAGCGCGagGUUuugaGCCuccugAGGCAg -3'
miRNA:   3'- caGCUGCUUGCGCagCAG----UGG-----UCCGU- -5'
14625 5' -55.8 NC_003521.1 + 127466 0.68 0.906167
Target:  5'- uGUUGACGcccgccagcgccgaGAUGCG-CGUCACCAGucGCAg -3'
miRNA:   3'- -CAGCUGC--------------UUGCGCaGCAGUGGUC--CGU- -5'
14625 5' -55.8 NC_003521.1 + 178502 0.68 0.907946
Target:  5'- aGUCGAUGcguCGCGguaccUCGUCGCCcauccgguagacGGGCAg -3'
miRNA:   3'- -CAGCUGCuu-GCGC-----AGCAGUGG------------UCCGU- -5'
14625 5' -55.8 NC_003521.1 + 97640 0.68 0.907946
Target:  5'- cUCGACGuuCGCGgCGgCGCCGGGUc -3'
miRNA:   3'- cAGCUGCuuGCGCaGCaGUGGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 72855 0.68 0.907946
Target:  5'- -gCGGCGAcgguaggcacgGCGguCGUCGUCACCgcAGGCu -3'
miRNA:   3'- caGCUGCU-----------UGC--GCAGCAGUGG--UCCGu -5'
14625 5' -55.8 NC_003521.1 + 186931 0.68 0.907946
Target:  5'- --gGACGAGCGCGugacugUCGUUGCgcagCAGGCAc -3'
miRNA:   3'- cagCUGCUUGCGC------AGCAGUG----GUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 91352 0.68 0.907946
Target:  5'- -cCGGCGAagccgcgaaagaGCGCGUCGUagagguggguCCAGGCc -3'
miRNA:   3'- caGCUGCU------------UGCGCAGCAgu--------GGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 84182 0.68 0.913733
Target:  5'- cGUCGAgcaCGAagaggaagcccaGgGCGUCGcgcagCACCAGGCGc -3'
miRNA:   3'- -CAGCU---GCU------------UgCGCAGCa----GUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 57595 0.68 0.913733
Target:  5'- -gCGGCGAaccccgagucaGCGUGcCGUCGcgcuCCAGGCAc -3'
miRNA:   3'- caGCUGCU-----------UGCGCaGCAGU----GGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 233353 0.68 0.913733
Target:  5'- -cCGGCGAGCcugcuggauccGCGgaugCGUCGCCGGGa- -3'
miRNA:   3'- caGCUGCUUG-----------CGCa---GCAGUGGUCCgu -5'
14625 5' -55.8 NC_003521.1 + 121768 0.68 0.919299
Target:  5'- gGUgGAUGAugGUGUCGgccaCGGGCAg -3'
miRNA:   3'- -CAgCUGCUugCGCAGCagugGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 124069 0.68 0.919299
Target:  5'- cGUC-AgGAugGUGUCGUCGUCGGGCc -3'
miRNA:   3'- -CAGcUgCUugCGCAGCAGUGGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 234087 0.68 0.919299
Target:  5'- cUCGGCGAGCGCuGgcugCGUCaggcccugcACCAcGGCGa -3'
miRNA:   3'- cAGCUGCUUGCG-Ca---GCAG---------UGGU-CCGU- -5'
14625 5' -55.8 NC_003521.1 + 223965 0.68 0.919299
Target:  5'- uUCGAUGuAGCG-GUCGUUGUCAGGCAc -3'
miRNA:   3'- cAGCUGC-UUGCgCAGCAGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 135663 0.68 0.919299
Target:  5'- cGUCGGCG---GCGUCGUCACCAc--- -3'
miRNA:   3'- -CAGCUGCuugCGCAGCAGUGGUccgu -5'
14625 5' -55.8 NC_003521.1 + 118762 0.68 0.924643
Target:  5'- aGUCGGCGGccguGCGCa-CGUCGCCcuGCAu -3'
miRNA:   3'- -CAGCUGCU----UGCGcaGCAGUGGucCGU- -5'
14625 5' -55.8 NC_003521.1 + 120201 0.68 0.924643
Target:  5'- -gCGACGAGuCGUGguugGUgACCAGGCGc -3'
miRNA:   3'- caGCUGCUU-GCGCag--CAgUGGUCCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.