miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14625 5' -55.8 NC_003521.1 + 104027 0.72 0.720808
Target:  5'- cGUCGGCGGGCaGCGUgaccgugagcccgcUGUCGCgCAGGUAg -3'
miRNA:   3'- -CAGCUGCUUG-CGCA--------------GCAGUG-GUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 104577 0.69 0.895716
Target:  5'- cGUCGGCGuAGCggccgGCGUgCGUCAUgAGGUAg -3'
miRNA:   3'- -CAGCUGC-UUG-----CGCA-GCAGUGgUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 105106 0.68 0.901939
Target:  5'- -gCGGCGAGCGCGagGUUuugaGCCuccugAGGCAg -3'
miRNA:   3'- caGCUGCUUGCGCagCAG----UGG-----UCCGU- -5'
14625 5' -55.8 NC_003521.1 + 105569 0.73 0.675206
Target:  5'- cGUCGGCGuccgccgcCGUGUCGUCGCCGccgccGGCGc -3'
miRNA:   3'- -CAGCUGCuu------GCGCAGCAGUGGU-----CCGU- -5'
14625 5' -55.8 NC_003521.1 + 109460 0.67 0.934662
Target:  5'- cUCGGguaUGGGCGCGUCuGggaacaugcgCGCCAGGCGc -3'
miRNA:   3'- cAGCU---GCUUGCGCAG-Ca---------GUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 110882 0.66 0.966022
Target:  5'- -gCGGCaGAACuGCGcCGUCucgGCCAGGUg -3'
miRNA:   3'- caGCUG-CUUG-CGCaGCAG---UGGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 113775 0.71 0.779323
Target:  5'- cGUCGACGAcggcgacggccaGCGCGaCGggCACCGcGGCGg -3'
miRNA:   3'- -CAGCUGCU------------UGCGCaGCa-GUGGU-CCGU- -5'
14625 5' -55.8 NC_003521.1 + 116369 0.7 0.861458
Target:  5'- -gCGGCGAACGCGU-GcCGCCGcGGCc -3'
miRNA:   3'- caGCUGCUUGCGCAgCaGUGGU-CCGu -5'
14625 5' -55.8 NC_003521.1 + 118198 0.67 0.94803
Target:  5'- aGUCGGggccgcCGAGCGCGcggccgccgcCGUCGCCGGGg- -3'
miRNA:   3'- -CAGCU------GCUUGCGCa---------GCAGUGGUCCgu -5'
14625 5' -55.8 NC_003521.1 + 118762 0.68 0.924643
Target:  5'- aGUCGGCGGccguGCGCa-CGUCGCCcuGCAu -3'
miRNA:   3'- -CAGCUGCU----UGCGcaGCAGUGGucCGU- -5'
14625 5' -55.8 NC_003521.1 + 120201 0.68 0.924643
Target:  5'- -gCGACGAGuCGUGguugGUgACCAGGCGc -3'
miRNA:   3'- caGCUGCUU-GCGCag--CAgUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 121768 0.68 0.919299
Target:  5'- gGUgGAUGAugGUGUCGgccaCGGGCAg -3'
miRNA:   3'- -CAgCUGCUugCGCAGCagugGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 122242 0.69 0.895716
Target:  5'- -gCGACuGAGCGCcgccaCGUCGCUGGGCGu -3'
miRNA:   3'- caGCUG-CUUGCGca---GCAGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 122654 0.68 0.929764
Target:  5'- -cCGGCGG--GCGUCGUCugC-GGCGg -3'
miRNA:   3'- caGCUGCUugCGCAGCAGugGuCCGU- -5'
14625 5' -55.8 NC_003521.1 + 123569 0.66 0.971807
Target:  5'- -aCGGCGGugGCGggauggCGgcggCGCCGGGa- -3'
miRNA:   3'- caGCUGCUugCGCa-----GCa---GUGGUCCgu -5'
14625 5' -55.8 NC_003521.1 + 124069 0.68 0.919299
Target:  5'- cGUC-AgGAugGUGUCGUCGUCGGGCc -3'
miRNA:   3'- -CAGcUgCUugCGCAGCAGUGGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 125291 0.67 0.939338
Target:  5'- cGUCaGGCGAGcCGCGUCGuUCGCgGacgcGGCGg -3'
miRNA:   3'- -CAG-CUGCUU-GCGCAGC-AGUGgU----CCGU- -5'
14625 5' -55.8 NC_003521.1 + 125955 0.67 0.952049
Target:  5'- uGUCGGCcGACGCGggCGUCagcACCAGuucGCAc -3'
miRNA:   3'- -CAGCUGcUUGCGCa-GCAG---UGGUC---CGU- -5'
14625 5' -55.8 NC_003521.1 + 126789 0.7 0.853252
Target:  5'- gGUCGAggaggaGAGCGCGacggucaUCGgUACCAGGCAg -3'
miRNA:   3'- -CAGCUg-----CUUGCGC-------AGCaGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 127116 0.69 0.889278
Target:  5'- --aGugGAagagcaGCGCGUCGUgCACCuccAGGCGg -3'
miRNA:   3'- cagCugCU------UGCGCAGCA-GUGG---UCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.