Results 41 - 60 of 120 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14625 | 5' | -55.8 | NC_003521.1 | + | 172286 | 0.67 | 0.937959 |
Target: 5'- aGUUGGCGGcCGCugccgccguccgguGUCGguggCGCCAGGCc -3' miRNA: 3'- -CAGCUGCUuGCG--------------CAGCa---GUGGUCCGu -5' |
|||||||
14625 | 5' | -55.8 | NC_003521.1 | + | 226856 | 0.67 | 0.955854 |
Target: 5'- cGUCGuagucACGGGCGCGguacUUGUCGCCGugcucguacuGGCAu -3' miRNA: 3'- -CAGC-----UGCUUGCGC----AGCAGUGGU----------CCGU- -5' |
|||||||
14625 | 5' | -55.8 | NC_003521.1 | + | 204694 | 0.67 | 0.943794 |
Target: 5'- gGUCGACGAGggcaGCGagGUgacCACCAcGGCGg -3' miRNA: 3'- -CAGCUGCUUg---CGCagCA---GUGGU-CCGU- -5' |
|||||||
14625 | 5' | -55.8 | NC_003521.1 | + | 216060 | 0.67 | 0.952439 |
Target: 5'- -aCGACGGAUGCGggucgauugaugucgCGUUACgGGGUg -3' miRNA: 3'- caGCUGCUUGCGCa--------------GCAGUGgUCCGu -5' |
|||||||
14625 | 5' | -55.8 | NC_003521.1 | + | 176682 | 0.67 | 0.939338 |
Target: 5'- cGUUGACG-GCGUugccCGUCAUCAGGUAg -3' miRNA: 3'- -CAGCUGCuUGCGca--GCAGUGGUCCGU- -5' |
|||||||
14625 | 5' | -55.8 | NC_003521.1 | + | 103126 | 0.67 | 0.939338 |
Target: 5'- -cUGGCGcAGCGCGcggCGgugcugcagCACCAGGCGg -3' miRNA: 3'- caGCUGC-UUGCGCa--GCa--------GUGGUCCGU- -5' |
|||||||
14625 | 5' | -55.8 | NC_003521.1 | + | 184113 | 0.67 | 0.952049 |
Target: 5'- cUCGACGucGACGCGaccagCGUCAUCcgcugccuGGGCGg -3' miRNA: 3'- cAGCUGC--UUGCGCa----GCAGUGG--------UCCGU- -5' |
|||||||
14625 | 5' | -55.8 | NC_003521.1 | + | 177764 | 0.67 | 0.952049 |
Target: 5'- -aCGGgGu-CGCgGUCGUCGCCAGGg- -3' miRNA: 3'- caGCUgCuuGCG-CAGCAGUGGUCCgu -5' |
|||||||
14625 | 5' | -55.8 | NC_003521.1 | + | 197864 | 0.67 | 0.952049 |
Target: 5'- -cCGGCGGGuCGCGcUCGcugggCugCAGGCGg -3' miRNA: 3'- caGCUGCUU-GCGC-AGCa----GugGUCCGU- -5' |
|||||||
14625 | 5' | -55.8 | NC_003521.1 | + | 85315 | 0.67 | 0.953597 |
Target: 5'- gGUCGACGAACuGCGaauaguugaugaucCG-CGCCAGGUu -3' miRNA: 3'- -CAGCUGCUUG-CGCa-------------GCaGUGGUCCGu -5' |
|||||||
14625 | 5' | -55.8 | NC_003521.1 | + | 170844 | 0.67 | 0.955854 |
Target: 5'- -aCGACGAgacGCGCGUCGgcuUCuCCgcggGGGCGg -3' miRNA: 3'- caGCUGCU---UGCGCAGC---AGuGG----UCCGU- -5' |
|||||||
14625 | 5' | -55.8 | NC_003521.1 | + | 78874 | 0.67 | 0.934662 |
Target: 5'- gGUCGAUGAccagGCGCGUCaggggGUCcACgCGGGCc -3' miRNA: 3'- -CAGCUGCU----UGCGCAG-----CAG-UG-GUCCGu -5' |
|||||||
14625 | 5' | -55.8 | NC_003521.1 | + | 34716 | 0.67 | 0.934662 |
Target: 5'- -aCGGCGccguGCGCGUCcacgaaCACCGGGUAc -3' miRNA: 3'- caGCUGCu---UGCGCAGca----GUGGUCCGU- -5' |
|||||||
14625 | 5' | -55.8 | NC_003521.1 | + | 223685 | 0.67 | 0.957317 |
Target: 5'- gGUCgGGCGaAGCGCGcCGgcaggaucgacgaccUCGCCGGGUAc -3' miRNA: 3'- -CAG-CUGC-UUGCGCaGC---------------AGUGGUCCGU- -5' |
|||||||
14625 | 5' | -55.8 | NC_003521.1 | + | 170487 | 0.67 | 0.934662 |
Target: 5'- -gCGGCGAuCGCGaagaUCGUCACgAGGgGa -3' miRNA: 3'- caGCUGCUuGCGC----AGCAGUGgUCCgU- -5' |
|||||||
14625 | 5' | -55.8 | NC_003521.1 | + | 122654 | 0.68 | 0.929764 |
Target: 5'- -cCGGCGG--GCGUCGUCugC-GGCGg -3' miRNA: 3'- caGCUGCUugCGCAGCAGugGuCCGU- -5' |
|||||||
14625 | 5' | -55.8 | NC_003521.1 | + | 124069 | 0.68 | 0.919299 |
Target: 5'- cGUC-AgGAugGUGUCGUCGUCGGGCc -3' miRNA: 3'- -CAGcUgCUugCGCAGCAGUGGUCCGu -5' |
|||||||
14625 | 5' | -55.8 | NC_003521.1 | + | 45044 | 0.68 | 0.929764 |
Target: 5'- gGUCGA-GAGcCGCGcCGcUCguGCCAGGCAa -3' miRNA: 3'- -CAGCUgCUU-GCGCaGC-AG--UGGUCCGU- -5' |
|||||||
14625 | 5' | -55.8 | NC_003521.1 | + | 46336 | 0.68 | 0.929764 |
Target: 5'- -gCGAgGAggGCGCGUCGUCGgacgaGGGCGa -3' miRNA: 3'- caGCUgCU--UGCGCAGCAGUgg---UCCGU- -5' |
|||||||
14625 | 5' | -55.8 | NC_003521.1 | + | 121768 | 0.68 | 0.919299 |
Target: 5'- gGUgGAUGAugGUGUCGgccaCGGGCAg -3' miRNA: 3'- -CAgCUGCUugCGCAGCagugGUCCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home