miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14625 5' -55.8 NC_003521.1 + 105569 0.73 0.675206
Target:  5'- cGUCGGCGuccgccgcCGUGUCGUCGCCGccgccGGCGc -3'
miRNA:   3'- -CAGCUGCuu------GCGCAGCAGUGGU-----CCGU- -5'
14625 5' -55.8 NC_003521.1 + 130752 0.75 0.606171
Target:  5'- uGUCGGCGGGCGCGagCGccgCGCCGGGgGa -3'
miRNA:   3'- -CAGCUGCUUGCGCa-GCa--GUGGUCCgU- -5'
14625 5' -55.8 NC_003521.1 + 90910 0.77 0.47261
Target:  5'- cGUCGGCGucgGUGUUGUUGCCGGGCAa -3'
miRNA:   3'- -CAGCUGCuugCGCAGCAGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 225536 0.98 0.029509
Target:  5'- cGUCGACGAACGC-UCGUCACCAGGCAg -3'
miRNA:   3'- -CAGCUGCUUGCGcAGCAGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 77247 0.7 0.830559
Target:  5'- cGUCGGCGGgguccACGgGguacUCGcCGCCGGGCAc -3'
miRNA:   3'- -CAGCUGCU-----UGCgC----AGCaGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 17546 0.7 0.854008
Target:  5'- aGUUGcGCGAACGCaUCGUCACCGaucuGCAg -3'
miRNA:   3'- -CAGC-UGCUUGCGcAGCAGUGGUc---CGU- -5'
14625 5' -55.8 NC_003521.1 + 233353 0.68 0.913733
Target:  5'- -cCGGCGAGCcugcuggauccGCGgaugCGUCGCCGGGa- -3'
miRNA:   3'- caGCUGCUUG-----------CGCa---GCAGUGGUCCgu -5'
14625 5' -55.8 NC_003521.1 + 57595 0.68 0.913733
Target:  5'- -gCGGCGAaccccgagucaGCGUGcCGUCGcgcuCCAGGCAc -3'
miRNA:   3'- caGCUGCU-----------UGCGCaGCAGU----GGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 72855 0.68 0.907946
Target:  5'- -gCGGCGAcgguaggcacgGCGguCGUCGUCACCgcAGGCu -3'
miRNA:   3'- caGCUGCU-----------UGC--GCAGCAGUGG--UCCGu -5'
14625 5' -55.8 NC_003521.1 + 186931 0.68 0.907946
Target:  5'- --gGACGAGCGCGugacugUCGUUGCgcagCAGGCAc -3'
miRNA:   3'- cagCUGCUUGCGC------AGCAGUG----GUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 127466 0.68 0.906167
Target:  5'- uGUUGACGcccgccagcgccgaGAUGCG-CGUCACCAGucGCAg -3'
miRNA:   3'- -CAGCUGC--------------UUGCGCaGCAGUGGUC--CGU- -5'
14625 5' -55.8 NC_003521.1 + 105106 0.68 0.901939
Target:  5'- -gCGGCGAGCGCGagGUUuugaGCCuccugAGGCAg -3'
miRNA:   3'- caGCUGCUUGCGCagCAG----UGG-----UCCGU- -5'
14625 5' -55.8 NC_003521.1 + 215754 0.69 0.895716
Target:  5'- -cCGACG-ACGCGUUGcCGCUgaaGGGCGc -3'
miRNA:   3'- caGCUGCuUGCGCAGCaGUGG---UCCGU- -5'
14625 5' -55.8 NC_003521.1 + 122242 0.69 0.895716
Target:  5'- -gCGACuGAGCGCcgccaCGUCGCUGGGCGu -3'
miRNA:   3'- caGCUG-CUUGCGca---GCAGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 232279 0.69 0.889278
Target:  5'- -gUGACGGugGaUGUCGUCGcgcccacgguCCGGGCAc -3'
miRNA:   3'- caGCUGCUugC-GCAGCAGU----------GGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 134144 0.69 0.889278
Target:  5'- --aGugGAugGCGugcaucUCGUCGCaCAGGUAg -3'
miRNA:   3'- cagCugCUugCGC------AGCAGUG-GUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 54312 0.69 0.881952
Target:  5'- --aGAgcAGCGCGUCGugcuccgUCACCAGGCGc -3'
miRNA:   3'- cagCUgcUUGCGCAGC-------AGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 168978 0.69 0.868714
Target:  5'- uGUCGcCGAcGCGCGUCGgUCGCgggAGGCGg -3'
miRNA:   3'- -CAGCuGCU-UGCGCAGC-AGUGg--UCCGU- -5'
14625 5' -55.8 NC_003521.1 + 224084 0.7 0.854008
Target:  5'- -cCGGCGGGCGCG-CG-CGCC-GGCGg -3'
miRNA:   3'- caGCUGCUUGCGCaGCaGUGGuCCGU- -5'
14625 5' -55.8 NC_003521.1 + 123569 0.66 0.971807
Target:  5'- -aCGGCGGugGCGggauggCGgcggCGCCGGGa- -3'
miRNA:   3'- caGCUGCUugCGCa-----GCa---GUGGUCCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.