miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14625 5' -55.8 NC_003521.1 + 77247 0.7 0.830559
Target:  5'- cGUCGGCGGgguccACGgGguacUCGcCGCCGGGCAc -3'
miRNA:   3'- -CAGCUGCU-----UGCgC----AGCaGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 78874 0.67 0.934662
Target:  5'- gGUCGAUGAccagGCGCGUCaggggGUCcACgCGGGCc -3'
miRNA:   3'- -CAGCUGCU----UGCGCAG-----CAG-UG-GUCCGu -5'
14625 5' -55.8 NC_003521.1 + 80400 0.7 0.822398
Target:  5'- uUCGGCGuucugcgguguGCGCGgguuUCGUCACCGGGgAa -3'
miRNA:   3'- cAGCUGCu----------UGCGC----AGCAGUGGUCCgU- -5'
14625 5' -55.8 NC_003521.1 + 80539 0.66 0.959449
Target:  5'- -aCGACGAguacgACGaCGaCGgcuacCACCAGGCAa -3'
miRNA:   3'- caGCUGCU-----UGC-GCaGCa----GUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 82852 0.66 0.959099
Target:  5'- -gCGGCGGcgucgcuaccaGCGcCGUCGUCGCCcagccucAGGCc -3'
miRNA:   3'- caGCUGCU-----------UGC-GCAGCAGUGG-------UCCGu -5'
14625 5' -55.8 NC_003521.1 + 84182 0.68 0.913733
Target:  5'- cGUCGAgcaCGAagaggaagcccaGgGCGUCGcgcagCACCAGGCGc -3'
miRNA:   3'- -CAGCU---GCU------------UgCGCAGCa----GUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 85315 0.67 0.953597
Target:  5'- gGUCGACGAACuGCGaauaguugaugaucCG-CGCCAGGUu -3'
miRNA:   3'- -CAGCUGCUUG-CGCa-------------GCaGUGGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 86661 0.7 0.819918
Target:  5'- -cCGACGAcagguugaggaucaGCGCGUCGUCguaucuggcggGCCGcGGCGg -3'
miRNA:   3'- caGCUGCU--------------UGCGCAGCAG-----------UGGU-CCGU- -5'
14625 5' -55.8 NC_003521.1 + 90910 0.77 0.47261
Target:  5'- cGUCGGCGucgGUGUUGUUGCCGGGCAa -3'
miRNA:   3'- -CAGCUGCuugCGCAGCAGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 91352 0.68 0.907946
Target:  5'- -cCGGCGAagccgcgaaagaGCGCGUCGUagagguggguCCAGGCc -3'
miRNA:   3'- caGCUGCU------------UGCGCAGCAgu--------GGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 91520 0.68 0.924643
Target:  5'- -aCGGCGGcCGCGUCGUCGcgcuCCAG-CAc -3'
miRNA:   3'- caGCUGCUuGCGCAGCAGU----GGUCcGU- -5'
14625 5' -55.8 NC_003521.1 + 91668 0.66 0.966022
Target:  5'- --aGACGGACGaCGagGUgGCCAcGGCGu -3'
miRNA:   3'- cagCUGCUUGC-GCagCAgUGGU-CCGU- -5'
14625 5' -55.8 NC_003521.1 + 94012 0.66 0.962837
Target:  5'- --aGGCgGAGCGC-UCGUCGuCCAGGUc -3'
miRNA:   3'- cagCUG-CUUGCGcAGCAGU-GGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 95815 0.69 0.889278
Target:  5'- cGUCGGCGAugucgGCGCG-CGagGCCucgguGGCAu -3'
miRNA:   3'- -CAGCUGCU-----UGCGCaGCagUGGu----CCGU- -5'
14625 5' -55.8 NC_003521.1 + 97640 0.68 0.907946
Target:  5'- cUCGACGuuCGCGgCGgCGCCGGGUc -3'
miRNA:   3'- cAGCUGCuuGCGCaGCaGUGGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 99024 0.67 0.952049
Target:  5'- --aGACGAugGCGcCGgcuCCGGGCc -3'
miRNA:   3'- cagCUGCUugCGCaGCaguGGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 99245 0.69 0.871562
Target:  5'- -cUGACGGugcGCGCGUCGUCGCgCgcgagguccagacagAGGCGg -3'
miRNA:   3'- caGCUGCU---UGCGCAGCAGUG-G---------------UCCGU- -5'
14625 5' -55.8 NC_003521.1 + 100100 0.72 0.742606
Target:  5'- -cCGACGAggacucGCGCGggaugacguUCGUCACCAGGa- -3'
miRNA:   3'- caGCUGCU------UGCGC---------AGCAGUGGUCCgu -5'
14625 5' -55.8 NC_003521.1 + 100904 0.67 0.955483
Target:  5'- aGUCGGCGAGggugggcuccgcuCGCGUCGggauuuCCGcGGCAc -3'
miRNA:   3'- -CAGCUGCUU-------------GCGCAGCagu---GGU-CCGU- -5'
14625 5' -55.8 NC_003521.1 + 103126 0.67 0.939338
Target:  5'- -cUGGCGcAGCGCGcggCGgugcugcagCACCAGGCGg -3'
miRNA:   3'- caGCUGC-UUGCGCa--GCa--------GUGGUCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.