miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14625 5' -55.8 NC_003521.1 + 5542 0.7 0.854008
Target:  5'- aGUUGGCG-GCGCGUCGUuccucccggUugCGGGCu -3'
miRNA:   3'- -CAGCUGCuUGCGCAGCA---------GugGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 5696 0.68 0.929764
Target:  5'- -gCGGgGAACggGCGcCGUCACCGGGg- -3'
miRNA:   3'- caGCUgCUUG--CGCaGCAGUGGUCCgu -5'
14625 5' -55.8 NC_003521.1 + 12626 0.66 0.96872
Target:  5'- -cCGugGAACGCGUgcguuccuuccagCGUCACCAcgaacaGCGc -3'
miRNA:   3'- caGCugCUUGCGCA-------------GCAGUGGUc-----CGU- -5'
14625 5' -55.8 NC_003521.1 + 16494 0.66 0.971536
Target:  5'- aGUCGACucAGCGCGa-GUCACCgugacggGGGCGu -3'
miRNA:   3'- -CAGCUGc-UUGCGCagCAGUGG-------UCCGU- -5'
14625 5' -55.8 NC_003521.1 + 17546 0.7 0.854008
Target:  5'- aGUUGcGCGAACGCaUCGUCACCGaucuGCAg -3'
miRNA:   3'- -CAGC-UGCUUGCGcAGCAGUGGUc---CGU- -5'
14625 5' -55.8 NC_003521.1 + 23078 0.66 0.969011
Target:  5'- cGUCuGugGugucUGCGUcCGUgGCCGGGCGg -3'
miRNA:   3'- -CAG-CugCuu--GCGCA-GCAgUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 25551 0.66 0.96901
Target:  5'- -aCGGCGGACGCuGUUGUg--CAGGCGg -3'
miRNA:   3'- caGCUGCUUGCG-CAGCAgugGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 34716 0.67 0.934662
Target:  5'- -aCGGCGccguGCGCGUCcacgaaCACCGGGUAc -3'
miRNA:   3'- caGCUGCu---UGCGCAGca----GUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 35811 0.66 0.96901
Target:  5'- cGUCG-CGGcACGcCGUCGUUAgCGGGUc -3'
miRNA:   3'- -CAGCuGCU-UGC-GCAGCAGUgGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 43125 0.72 0.733181
Target:  5'- -gCGGCGAGCGC-UCGgCGCUGGGCGu -3'
miRNA:   3'- caGCUGCUUGCGcAGCaGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 45044 0.68 0.929764
Target:  5'- gGUCGA-GAGcCGCGcCGcUCguGCCAGGCAa -3'
miRNA:   3'- -CAGCUgCUU-GCGCaGC-AG--UGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 45445 0.66 0.96901
Target:  5'- -aCGguACGGGCGCcUCGUCcUCGGGCGu -3'
miRNA:   3'- caGC--UGCUUGCGcAGCAGuGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 46336 0.68 0.929764
Target:  5'- -gCGAgGAggGCGCGUCGUCGgacgaGGGCGa -3'
miRNA:   3'- caGCUgCU--UGCGCAGCAGUgg---UCCGU- -5'
14625 5' -55.8 NC_003521.1 + 47991 0.67 0.952049
Target:  5'- cGUCcACGGACGCGc---CGCCGGGCu -3'
miRNA:   3'- -CAGcUGCUUGCGCagcaGUGGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 54312 0.69 0.881952
Target:  5'- --aGAgcAGCGCGUCGugcuccgUCACCAGGCGc -3'
miRNA:   3'- cagCUgcUUGCGCAGC-------AGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 57595 0.68 0.913733
Target:  5'- -gCGGCGAaccccgagucaGCGUGcCGUCGcgcuCCAGGCAc -3'
miRNA:   3'- caGCUGCU-----------UGCGCaGCAGU----GGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 64762 0.67 0.955854
Target:  5'- -cCGGCcGGCGCGg---CACCGGGCGa -3'
miRNA:   3'- caGCUGcUUGCGCagcaGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 72388 0.66 0.96901
Target:  5'- cUCGGCGucCuCGUCGaUCACCAgcGGCGg -3'
miRNA:   3'- cAGCUGCuuGcGCAGC-AGUGGU--CCGU- -5'
14625 5' -55.8 NC_003521.1 + 72855 0.68 0.907946
Target:  5'- -gCGGCGAcgguaggcacgGCGguCGUCGUCACCgcAGGCu -3'
miRNA:   3'- caGCUGCU-----------UGC--GCAGCAGUGG--UCCGu -5'
14625 5' -55.8 NC_003521.1 + 75976 0.67 0.94803
Target:  5'- -cCGACGAGgaGCGgcccUCGCCGGGCGc -3'
miRNA:   3'- caGCUGCUUg-CGCagc-AGUGGUCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.