miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14625 5' -55.8 NC_003521.1 + 236473 0.67 0.943794
Target:  5'- -gCGAUGAGCgaaccgccgGCGgCGguggCGCCAGGCAu -3'
miRNA:   3'- caGCUGCUUG---------CGCaGCa---GUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 236140 0.67 0.952049
Target:  5'- --gGACGGgggggaccGCGCGaCGUCGCC-GGCGg -3'
miRNA:   3'- cagCUGCU--------UGCGCaGCAGUGGuCCGU- -5'
14625 5' -55.8 NC_003521.1 + 234087 0.68 0.919299
Target:  5'- cUCGGCGAGCGCuGgcugCGUCaggcccugcACCAcGGCGa -3'
miRNA:   3'- cAGCUGCUUGCG-Ca---GCAG---------UGGU-CCGU- -5'
14625 5' -55.8 NC_003521.1 + 233353 0.68 0.913733
Target:  5'- -cCGGCGAGCcugcuggauccGCGgaugCGUCGCCGGGa- -3'
miRNA:   3'- caGCUGCUUG-----------CGCa---GCAGUGGUCCgu -5'
14625 5' -55.8 NC_003521.1 + 232279 0.69 0.889278
Target:  5'- -gUGACGGugGaUGUCGUCGcgcccacgguCCGGGCAc -3'
miRNA:   3'- caGCUGCUugC-GCAGCAGU----------GGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 229311 0.66 0.971807
Target:  5'- uGUCGACGGuGCGCGgagcgacUGUUGgCAGGCu -3'
miRNA:   3'- -CAGCUGCU-UGCGCa------GCAGUgGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 226856 0.67 0.955854
Target:  5'- cGUCGuagucACGGGCGCGguacUUGUCGCCGugcucguacuGGCAu -3'
miRNA:   3'- -CAGC-----UGCUUGCGC----AGCAGUGGU----------CCGU- -5'
14625 5' -55.8 NC_003521.1 + 226547 0.67 0.945514
Target:  5'- -gCGugGAgaugACGCuGUCGUCACgaucgcgccgcggauCGGGCAg -3'
miRNA:   3'- caGCugCU----UGCG-CAGCAGUG---------------GUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 225536 0.98 0.029509
Target:  5'- cGUCGACGAACGC-UCGUCACCAGGCAg -3'
miRNA:   3'- -CAGCUGCUUGCGcAGCAGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 224084 0.7 0.854008
Target:  5'- -cCGGCGGGCGCG-CG-CGCC-GGCGg -3'
miRNA:   3'- caGCUGCUUGCGCaGCaGUGGuCCGU- -5'
14625 5' -55.8 NC_003521.1 + 223965 0.68 0.919299
Target:  5'- uUCGAUGuAGCG-GUCGUUGUCAGGCAc -3'
miRNA:   3'- cAGCUGC-UUGCgCAGCAGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 223685 0.67 0.957317
Target:  5'- gGUCgGGCGaAGCGCGcCGgcaggaucgacgaccUCGCCGGGUAc -3'
miRNA:   3'- -CAG-CUGC-UUGCGCaGC---------------AGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 220649 0.72 0.751012
Target:  5'- cGUCGcgacGCGGAC-CGUCGUCGCCGucgucucGGCAc -3'
miRNA:   3'- -CAGC----UGCUUGcGCAGCAGUGGU-------CCGU- -5'
14625 5' -55.8 NC_003521.1 + 219207 0.67 0.943794
Target:  5'- ---cAUGAugGCG--GUCGCCAGGCAg -3'
miRNA:   3'- cagcUGCUugCGCagCAGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 216622 0.7 0.829751
Target:  5'- aGUCGACGGuaggcggGCGCGcCGaCGCCGGGa- -3'
miRNA:   3'- -CAGCUGCU-------UGCGCaGCaGUGGUCCgu -5'
14625 5' -55.8 NC_003521.1 + 216060 0.67 0.952439
Target:  5'- -aCGACGGAUGCGggucgauugaugucgCGUUACgGGGUg -3'
miRNA:   3'- caGCUGCUUGCGCa--------------GCAGUGgUCCGu -5'
14625 5' -55.8 NC_003521.1 + 215754 0.69 0.895716
Target:  5'- -cCGACG-ACGCGUUGcCGCUgaaGGGCGc -3'
miRNA:   3'- caGCUGCuUGCGCAGCaGUGG---UCCGU- -5'
14625 5' -55.8 NC_003521.1 + 213533 0.66 0.971807
Target:  5'- -aUGGCGGGCaGC-UCGgagCACCAGGUg -3'
miRNA:   3'- caGCUGCUUG-CGcAGCa--GUGGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 211568 0.69 0.889278
Target:  5'- -aUGAaGAGCGCugGUCGUCGCCGcGGCu -3'
miRNA:   3'- caGCUgCUUGCG--CAGCAGUGGU-CCGu -5'
14625 5' -55.8 NC_003521.1 + 210916 0.67 0.934662
Target:  5'- cUUGACGGccACGgGUCGUCGgucgucgucgcCCAGGUg -3'
miRNA:   3'- cAGCUGCU--UGCgCAGCAGU-----------GGUCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.