miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14625 5' -55.8 NC_003521.1 + 210889 0.7 0.822398
Target:  5'- cGUCGccuCGGugGC--CGUCGCCAGGCc -3'
miRNA:   3'- -CAGCu--GCUugCGcaGCAGUGGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 209807 0.7 0.861458
Target:  5'- -aCcACGAACGCGUCcUCGCCGGcGCc -3'
miRNA:   3'- caGcUGCUUGCGCAGcAGUGGUC-CGu -5'
14625 5' -55.8 NC_003521.1 + 208897 0.67 0.955854
Target:  5'- -cCGAgGAGCGCGagGUCAUCGcGCGc -3'
miRNA:   3'- caGCUgCUUGCGCagCAGUGGUcCGU- -5'
14625 5' -55.8 NC_003521.1 + 204694 0.67 0.943794
Target:  5'- gGUCGACGAGggcaGCGagGUgacCACCAcGGCGg -3'
miRNA:   3'- -CAGCUGCUUg---CGCagCA---GUGGU-CCGU- -5'
14625 5' -55.8 NC_003521.1 + 197864 0.67 0.952049
Target:  5'- -cCGGCGGGuCGCGcUCGcugggCugCAGGCGg -3'
miRNA:   3'- caGCUGCUU-GCGC-AGCa----GugGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 196908 0.75 0.55725
Target:  5'- gGUCGGgacgaaaguUGAGCGCGUCGUCcACC-GGCAg -3'
miRNA:   3'- -CAGCU---------GCUUGCGCAGCAG-UGGuCCGU- -5'
14625 5' -55.8 NC_003521.1 + 186931 0.68 0.907946
Target:  5'- --gGACGAGCGCGugacugUCGUUGCgcagCAGGCAc -3'
miRNA:   3'- cagCUGCUUGCGC------AGCAGUG----GUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 185709 0.66 0.959449
Target:  5'- uUUGAgGucCGCGUC-UCGCCGGGUg -3'
miRNA:   3'- cAGCUgCuuGCGCAGcAGUGGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 184113 0.67 0.952049
Target:  5'- cUCGACGucGACGCGaccagCGUCAUCcgcugccuGGGCGg -3'
miRNA:   3'- cAGCUGC--UUGCGCa----GCAGUGG--------UCCGU- -5'
14625 5' -55.8 NC_003521.1 + 182371 0.7 0.838553
Target:  5'- gGUCGACGugguGCGCGgaaaGuUCGCCcGGCAg -3'
miRNA:   3'- -CAGCUGCu---UGCGCag--C-AGUGGuCCGU- -5'
14625 5' -55.8 NC_003521.1 + 182027 0.73 0.684998
Target:  5'- cUCGAgacCGucuAUGCGUCGUCGCCGGcGCGc -3'
miRNA:   3'- cAGCU---GCu--UGCGCAGCAGUGGUC-CGU- -5'
14625 5' -55.8 NC_003521.1 + 180070 0.66 0.969011
Target:  5'- uGUCGcACGAugucguUGCG-CGUCACCccguccagggaGGGCAg -3'
miRNA:   3'- -CAGC-UGCUu-----GCGCaGCAGUGG-----------UCCGU- -5'
14625 5' -55.8 NC_003521.1 + 179783 0.66 0.966022
Target:  5'- --aGACGGAgGCGUC--CACCuGGCGg -3'
miRNA:   3'- cagCUGCUUgCGCAGcaGUGGuCCGU- -5'
14625 5' -55.8 NC_003521.1 + 178502 0.68 0.907946
Target:  5'- aGUCGAUGcguCGCGguaccUCGUCGCCcauccgguagacGGGCAg -3'
miRNA:   3'- -CAGCUGCuu-GCGC-----AGCAGUGG------------UCCGU- -5'
14625 5' -55.8 NC_003521.1 + 177764 0.67 0.952049
Target:  5'- -aCGGgGu-CGCgGUCGUCGCCAGGg- -3'
miRNA:   3'- caGCUgCuuGCG-CAGCAGUGGUCCgu -5'
14625 5' -55.8 NC_003521.1 + 176682 0.67 0.939338
Target:  5'- cGUUGACG-GCGUugccCGUCAUCAGGUAg -3'
miRNA:   3'- -CAGCUGCuUGCGca--GCAGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 172286 0.67 0.937959
Target:  5'- aGUUGGCGGcCGCugccgccguccgguGUCGguggCGCCAGGCc -3'
miRNA:   3'- -CAGCUGCUuGCG--------------CAGCa---GUGGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 171041 0.69 0.875773
Target:  5'- cUCGACGGcCGCucccUCGUCGCCGuGGUAu -3'
miRNA:   3'- cAGCUGCUuGCGc---AGCAGUGGU-CCGU- -5'
14625 5' -55.8 NC_003521.1 + 170844 0.67 0.955854
Target:  5'- -aCGACGAgacGCGCGUCGgcuUCuCCgcggGGGCGg -3'
miRNA:   3'- caGCUGCU---UGCGCAGC---AGuGG----UCCGU- -5'
14625 5' -55.8 NC_003521.1 + 170487 0.67 0.934662
Target:  5'- -gCGGCGAuCGCGaagaUCGUCACgAGGgGa -3'
miRNA:   3'- caGCUGCUuGCGC----AGCAGUGgUCCgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.