miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14625 5' -55.8 NC_003521.1 + 118198 0.67 0.94803
Target:  5'- aGUCGGggccgcCGAGCGCGcggccgccgcCGUCGCCGGGg- -3'
miRNA:   3'- -CAGCU------GCUUGCGCa---------GCAGUGGUCCgu -5'
14625 5' -55.8 NC_003521.1 + 75976 0.67 0.94803
Target:  5'- -cCGACGAGgaGCGgcccUCGCCGGGCGc -3'
miRNA:   3'- caGCUGCUUg-CGCagc-AGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 226547 0.67 0.945514
Target:  5'- -gCGugGAgaugACGCuGUCGUCACgaucgcgccgcggauCGGGCAg -3'
miRNA:   3'- caGCugCU----UGCG-CAGCAGUG---------------GUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 204694 0.67 0.943794
Target:  5'- gGUCGACGAGggcaGCGagGUgacCACCAcGGCGg -3'
miRNA:   3'- -CAGCUGCUUg---CGCagCA---GUGGU-CCGU- -5'
14625 5' -55.8 NC_003521.1 + 236473 0.67 0.943794
Target:  5'- -gCGAUGAGCgaaccgccgGCGgCGguggCGCCAGGCAu -3'
miRNA:   3'- caGCUGCUUG---------CGCaGCa---GUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 219207 0.67 0.943794
Target:  5'- ---cAUGAugGCG--GUCGCCAGGCAg -3'
miRNA:   3'- cagcUGCUugCGCagCAGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 103126 0.67 0.939338
Target:  5'- -cUGGCGcAGCGCGcggCGgugcugcagCACCAGGCGg -3'
miRNA:   3'- caGCUGC-UUGCGCa--GCa--------GUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 176682 0.67 0.939338
Target:  5'- cGUUGACG-GCGUugccCGUCAUCAGGUAg -3'
miRNA:   3'- -CAGCUGCuUGCGca--GCAGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 125291 0.67 0.939338
Target:  5'- cGUCaGGCGAGcCGCGUCGuUCGCgGacgcGGCGg -3'
miRNA:   3'- -CAG-CUGCUU-GCGCAGC-AGUGgU----CCGU- -5'
14625 5' -55.8 NC_003521.1 + 172286 0.67 0.937959
Target:  5'- aGUUGGCGGcCGCugccgccguccgguGUCGguggCGCCAGGCc -3'
miRNA:   3'- -CAGCUGCUuGCG--------------CAGCa---GUGGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 34716 0.67 0.934662
Target:  5'- -aCGGCGccguGCGCGUCcacgaaCACCGGGUAc -3'
miRNA:   3'- caGCUGCu---UGCGCAGca----GUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 170487 0.67 0.934662
Target:  5'- -gCGGCGAuCGCGaagaUCGUCACgAGGgGa -3'
miRNA:   3'- caGCUGCUuGCGC----AGCAGUGgUCCgU- -5'
14625 5' -55.8 NC_003521.1 + 210916 0.67 0.934662
Target:  5'- cUUGACGGccACGgGUCGUCGgucgucgucgcCCAGGUg -3'
miRNA:   3'- cAGCUGCU--UGCgCAGCAGU-----------GGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 109460 0.67 0.934662
Target:  5'- cUCGGguaUGGGCGCGUCuGggaacaugcgCGCCAGGCGc -3'
miRNA:   3'- cAGCU---GCUUGCGCAG-Ca---------GUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 78874 0.67 0.934662
Target:  5'- gGUCGAUGAccagGCGCGUCaggggGUCcACgCGGGCc -3'
miRNA:   3'- -CAGCUGCU----UGCGCAG-----CAG-UG-GUCCGu -5'
14625 5' -55.8 NC_003521.1 + 46336 0.68 0.929764
Target:  5'- -gCGAgGAggGCGCGUCGUCGgacgaGGGCGa -3'
miRNA:   3'- caGCUgCU--UGCGCAGCAGUgg---UCCGU- -5'
14625 5' -55.8 NC_003521.1 + 122654 0.68 0.929764
Target:  5'- -cCGGCGG--GCGUCGUCugC-GGCGg -3'
miRNA:   3'- caGCUGCUugCGCAGCAGugGuCCGU- -5'
14625 5' -55.8 NC_003521.1 + 45044 0.68 0.929764
Target:  5'- gGUCGA-GAGcCGCGcCGcUCguGCCAGGCAa -3'
miRNA:   3'- -CAGCUgCUU-GCGCaGC-AG--UGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 5696 0.68 0.929764
Target:  5'- -gCGGgGAACggGCGcCGUCACCGGGg- -3'
miRNA:   3'- caGCUgCUUG--CGCaGCAGUGGUCCgu -5'
14625 5' -55.8 NC_003521.1 + 118762 0.68 0.924643
Target:  5'- aGUCGGCGGccguGCGCa-CGUCGCCcuGCAu -3'
miRNA:   3'- -CAGCUGCU----UGCGcaGCAGUGGucCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.