miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14625 5' -55.8 NC_003521.1 + 155265 0.66 0.962837
Target:  5'- -gCGGCGGcgGCGCcucaggccCGUCGCUGGGCAa -3'
miRNA:   3'- caGCUGCU--UGCGca------GCAGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 80539 0.66 0.959449
Target:  5'- -aCGACGAguacgACGaCGaCGgcuacCACCAGGCAa -3'
miRNA:   3'- caGCUGCU-----UGC-GCaGCa----GUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 168378 0.66 0.959449
Target:  5'- aGUCGGCGGGCaggauguaggugGCGUUGcCGCCguugguggcuaGGGCGg -3'
miRNA:   3'- -CAGCUGCUUG------------CGCAGCaGUGG-----------UCCGU- -5'
14625 5' -55.8 NC_003521.1 + 185709 0.66 0.959449
Target:  5'- uUUGAgGucCGCGUC-UCGCCGGGUg -3'
miRNA:   3'- cAGCUgCuuGCGCAGcAGUGGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 82852 0.66 0.959099
Target:  5'- -gCGGCGGcgucgcuaccaGCGcCGUCGUCGCCcagccucAGGCc -3'
miRNA:   3'- caGCUGCU-----------UGC-GCAGCAGUGG-------UCCGu -5'
14625 5' -55.8 NC_003521.1 + 223685 0.67 0.957317
Target:  5'- gGUCgGGCGaAGCGCGcCGgcaggaucgacgaccUCGCCGGGUAc -3'
miRNA:   3'- -CAG-CUGC-UUGCGCaGC---------------AGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 208897 0.67 0.955854
Target:  5'- -cCGAgGAGCGCGagGUCAUCGcGCGc -3'
miRNA:   3'- caGCUgCUUGCGCagCAGUGGUcCGU- -5'
14625 5' -55.8 NC_003521.1 + 64762 0.67 0.955854
Target:  5'- -cCGGCcGGCGCGg---CACCGGGCGa -3'
miRNA:   3'- caGCUGcUUGCGCagcaGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 226856 0.67 0.955854
Target:  5'- cGUCGuagucACGGGCGCGguacUUGUCGCCGugcucguacuGGCAu -3'
miRNA:   3'- -CAGC-----UGCUUGCGC----AGCAGUGGU----------CCGU- -5'
14625 5' -55.8 NC_003521.1 + 170844 0.67 0.955854
Target:  5'- -aCGACGAgacGCGCGUCGgcuUCuCCgcggGGGCGg -3'
miRNA:   3'- caGCUGCU---UGCGCAGC---AGuGG----UCCGU- -5'
14625 5' -55.8 NC_003521.1 + 100904 0.67 0.955483
Target:  5'- aGUCGGCGAGggugggcuccgcuCGCGUCGggauuuCCGcGGCAc -3'
miRNA:   3'- -CAGCUGCUU-------------GCGCAGCagu---GGU-CCGU- -5'
14625 5' -55.8 NC_003521.1 + 85315 0.67 0.953597
Target:  5'- gGUCGACGAACuGCGaauaguugaugaucCG-CGCCAGGUu -3'
miRNA:   3'- -CAGCUGCUUG-CGCa-------------GCaGUGGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 216060 0.67 0.952439
Target:  5'- -aCGACGGAUGCGggucgauugaugucgCGUUACgGGGUg -3'
miRNA:   3'- caGCUGCUUGCGCa--------------GCAGUGgUCCGu -5'
14625 5' -55.8 NC_003521.1 + 125955 0.67 0.952049
Target:  5'- uGUCGGCcGACGCGggCGUCagcACCAGuucGCAc -3'
miRNA:   3'- -CAGCUGcUUGCGCa-GCAG---UGGUC---CGU- -5'
14625 5' -55.8 NC_003521.1 + 47991 0.67 0.952049
Target:  5'- cGUCcACGGACGCGc---CGCCGGGCu -3'
miRNA:   3'- -CAGcUGCUUGCGCagcaGUGGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 177764 0.67 0.952049
Target:  5'- -aCGGgGu-CGCgGUCGUCGCCAGGg- -3'
miRNA:   3'- caGCUgCuuGCG-CAGCAGUGGUCCgu -5'
14625 5' -55.8 NC_003521.1 + 236140 0.67 0.952049
Target:  5'- --gGACGGgggggaccGCGCGaCGUCGCC-GGCGg -3'
miRNA:   3'- cagCUGCU--------UGCGCaGCAGUGGuCCGU- -5'
14625 5' -55.8 NC_003521.1 + 99024 0.67 0.952049
Target:  5'- --aGACGAugGCGcCGgcuCCGGGCc -3'
miRNA:   3'- cagCUGCUugCGCaGCaguGGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 184113 0.67 0.952049
Target:  5'- cUCGACGucGACGCGaccagCGUCAUCcgcugccuGGGCGg -3'
miRNA:   3'- cAGCUGC--UUGCGCa----GCAGUGG--------UCCGU- -5'
14625 5' -55.8 NC_003521.1 + 197864 0.67 0.952049
Target:  5'- -cCGGCGGGuCGCGcUCGcugggCugCAGGCGg -3'
miRNA:   3'- caGCUGCUU-GCGC-AGCa----GugGUCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.