miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14625 5' -55.8 NC_003521.1 + 97640 0.68 0.907946
Target:  5'- cUCGACGuuCGCGgCGgCGCCGGGUc -3'
miRNA:   3'- cAGCUGCuuGCGCaGCaGUGGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 211568 0.69 0.889278
Target:  5'- -aUGAaGAGCGCugGUCGUCGCCGcGGCu -3'
miRNA:   3'- caGCUgCUUGCG--CAGCAGUGGU-CCGu -5'
14625 5' -55.8 NC_003521.1 + 126789 0.7 0.853252
Target:  5'- gGUCGAggaggaGAGCGCGacggucaUCGgUACCAGGCAg -3'
miRNA:   3'- -CAGCUg-----CUUGCGC-------AGCaGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 104027 0.72 0.720808
Target:  5'- cGUCGGCGGGCaGCGUgaccgugagcccgcUGUCGCgCAGGUAg -3'
miRNA:   3'- -CAGCUGCUUG-CGCA--------------GCAGUG-GUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 236473 0.67 0.943794
Target:  5'- -gCGAUGAGCgaaccgccgGCGgCGguggCGCCAGGCAu -3'
miRNA:   3'- caGCUGCUUG---------CGCaGCa---GUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 45044 0.68 0.929764
Target:  5'- gGUCGA-GAGcCGCGcCGcUCguGCCAGGCAa -3'
miRNA:   3'- -CAGCUgCUU-GCGCaGC-AG--UGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 127116 0.69 0.889278
Target:  5'- --aGugGAagagcaGCGCGUCGUgCACCuccAGGCGg -3'
miRNA:   3'- cagCugCU------UGCGCAGCA-GUGG---UCCGU- -5'
14625 5' -55.8 NC_003521.1 + 182027 0.73 0.684998
Target:  5'- cUCGAgacCGucuAUGCGUCGUCGCCGGcGCGc -3'
miRNA:   3'- cAGCU---GCu--UGCGCAGCAGUGGUC-CGU- -5'
14625 5' -55.8 NC_003521.1 + 91520 0.68 0.924643
Target:  5'- -aCGGCGGcCGCGUCGUCGcgcuCCAG-CAc -3'
miRNA:   3'- caGCUGCUuGCGCAGCAGU----GGUCcGU- -5'
14625 5' -55.8 NC_003521.1 + 196908 0.75 0.55725
Target:  5'- gGUCGGgacgaaaguUGAGCGCGUCGUCcACC-GGCAg -3'
miRNA:   3'- -CAGCU---------GCUUGCGCAGCAG-UGGuCCGU- -5'
14625 5' -55.8 NC_003521.1 + 95815 0.69 0.889278
Target:  5'- cGUCGGCGAugucgGCGCG-CGagGCCucgguGGCAu -3'
miRNA:   3'- -CAGCUGCU-----UGCGCaGCagUGGu----CCGU- -5'
14625 5' -55.8 NC_003521.1 + 178502 0.68 0.907946
Target:  5'- aGUCGAUGcguCGCGguaccUCGUCGCCcauccgguagacGGGCAg -3'
miRNA:   3'- -CAGCUGCuu-GCGC-----AGCAGUGG------------UCCGU- -5'
14625 5' -55.8 NC_003521.1 + 209807 0.7 0.861458
Target:  5'- -aCcACGAACGCGUCcUCGCCGGcGCc -3'
miRNA:   3'- caGcUGCUUGCGCAGcAGUGGUC-CGu -5'
14625 5' -55.8 NC_003521.1 + 5542 0.7 0.854008
Target:  5'- aGUUGGCG-GCGCGUCGUuccucccggUugCGGGCu -3'
miRNA:   3'- -CAGCUGCuUGCGCAGCA---------GugGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 86661 0.7 0.819918
Target:  5'- -cCGACGAcagguugaggaucaGCGCGUCGUCguaucuggcggGCCGcGGCGg -3'
miRNA:   3'- caGCUGCU--------------UGCGCAGCAG-----------UGGU-CCGU- -5'
14625 5' -55.8 NC_003521.1 + 100100 0.72 0.742606
Target:  5'- -cCGACGAggacucGCGCGggaugacguUCGUCACCAGGa- -3'
miRNA:   3'- caGCUGCU------UGCGC---------AGCAGUGGUCCgu -5'
14625 5' -55.8 NC_003521.1 + 177764 0.67 0.952049
Target:  5'- -aCGGgGu-CGCgGUCGUCGCCAGGg- -3'
miRNA:   3'- caGCUgCuuGCG-CAGCAGUGGUCCgu -5'
14625 5' -55.8 NC_003521.1 + 47991 0.67 0.952049
Target:  5'- cGUCcACGGACGCGc---CGCCGGGCu -3'
miRNA:   3'- -CAGcUGCUUGCGCagcaGUGGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 103126 0.67 0.939338
Target:  5'- -cUGGCGcAGCGCGcggCGgugcugcagCACCAGGCGg -3'
miRNA:   3'- caGCUGC-UUGCGCa--GCa--------GUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 46336 0.68 0.929764
Target:  5'- -gCGAgGAggGCGCGUCGUCGgacgaGGGCGa -3'
miRNA:   3'- caGCUgCU--UGCGCAGCAGUgg---UCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.