miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14625 5' -55.8 NC_003521.1 + 169453 0.84 0.201072
Target:  5'- cGUCGGCGGcgGCGgGuUCGUCGCCAGGCGc -3'
miRNA:   3'- -CAGCUGCU--UGCgC-AGCAGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 127116 0.69 0.889278
Target:  5'- --aGugGAagagcaGCGCGUCGUgCACCuccAGGCGg -3'
miRNA:   3'- cagCugCU------UGCGCAGCA-GUGG---UCCGU- -5'
14625 5' -55.8 NC_003521.1 + 211568 0.69 0.889278
Target:  5'- -aUGAaGAGCGCugGUCGUCGCCGcGGCu -3'
miRNA:   3'- caGCUgCUUGCG--CAGCAGUGGU-CCGu -5'
14625 5' -55.8 NC_003521.1 + 123569 0.66 0.971807
Target:  5'- -aCGGCGGugGCGggauggCGgcggCGCCGGGa- -3'
miRNA:   3'- caGCUGCUugCGCa-----GCa---GUGGUCCgu -5'
14625 5' -55.8 NC_003521.1 + 100100 0.72 0.742606
Target:  5'- -cCGACGAggacucGCGCGggaugacguUCGUCACCAGGa- -3'
miRNA:   3'- caGCUGCU------UGCGC---------AGCAGUGGUCCgu -5'
14625 5' -55.8 NC_003521.1 + 113775 0.71 0.779323
Target:  5'- cGUCGACGAcggcgacggccaGCGCGaCGggCACCGcGGCGg -3'
miRNA:   3'- -CAGCUGCU------------UGCGCaGCa-GUGGU-CCGU- -5'
14625 5' -55.8 NC_003521.1 + 86661 0.7 0.819918
Target:  5'- -cCGACGAcagguugaggaucaGCGCGUCGUCguaucuggcggGCCGcGGCGg -3'
miRNA:   3'- caGCUGCU--------------UGCGCAGCAG-----------UGGU-CCGU- -5'
14625 5' -55.8 NC_003521.1 + 80400 0.7 0.822398
Target:  5'- uUCGGCGuucugcgguguGCGCGgguuUCGUCACCGGGgAa -3'
miRNA:   3'- cAGCUGCu----------UGCGC----AGCAGUGGUCCgU- -5'
14625 5' -55.8 NC_003521.1 + 5542 0.7 0.854008
Target:  5'- aGUUGGCG-GCGCGUCGUuccucccggUugCGGGCu -3'
miRNA:   3'- -CAGCUGCuUGCGCAGCA---------GugGUCCGu -5'
14625 5' -55.8 NC_003521.1 + 171041 0.69 0.875773
Target:  5'- cUCGACGGcCGCucccUCGUCGCCGuGGUAu -3'
miRNA:   3'- cAGCUGCUuGCGc---AGCAGUGGU-CCGU- -5'
14625 5' -55.8 NC_003521.1 + 116369 0.7 0.861458
Target:  5'- -gCGGCGAACGCGU-GcCGCCGcGGCc -3'
miRNA:   3'- caGCUGCUUGCGCAgCaGUGGU-CCGu -5'
14625 5' -55.8 NC_003521.1 + 126789 0.7 0.853252
Target:  5'- gGUCGAggaggaGAGCGCGacggucaUCGgUACCAGGCAg -3'
miRNA:   3'- -CAGCUg-----CUUGCGC-------AGCaGUGGUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 196908 0.75 0.55725
Target:  5'- gGUCGGgacgaaaguUGAGCGCGUCGUCcACC-GGCAg -3'
miRNA:   3'- -CAGCU---------GCUUGCGCAGCAG-UGGuCCGU- -5'
14625 5' -55.8 NC_003521.1 + 209807 0.7 0.861458
Target:  5'- -aCcACGAACGCGUCcUCGCCGGcGCc -3'
miRNA:   3'- caGcUGCUUGCGCAGcAGUGGUC-CGu -5'
14625 5' -55.8 NC_003521.1 + 182027 0.73 0.684998
Target:  5'- cUCGAgacCGucuAUGCGUCGUCGCCGGcGCGc -3'
miRNA:   3'- cAGCU---GCu--UGCGCAGCAGUGGUC-CGU- -5'
14625 5' -55.8 NC_003521.1 + 182371 0.7 0.838553
Target:  5'- gGUCGACGugguGCGCGgaaaGuUCGCCcGGCAg -3'
miRNA:   3'- -CAGCUGCu---UGCGCag--C-AGUGGuCCGU- -5'
14625 5' -55.8 NC_003521.1 + 99245 0.69 0.871562
Target:  5'- -cUGACGGugcGCGCGUCGUCGCgCgcgagguccagacagAGGCGg -3'
miRNA:   3'- caGCUGCU---UGCGCAGCAGUG-G---------------UCCGU- -5'
14625 5' -55.8 NC_003521.1 + 95815 0.69 0.889278
Target:  5'- cGUCGGCGAugucgGCGCG-CGagGCCucgguGGCAu -3'
miRNA:   3'- -CAGCUGCU-----UGCGCaGCagUGGu----CCGU- -5'
14625 5' -55.8 NC_003521.1 + 104027 0.72 0.720808
Target:  5'- cGUCGGCGGGCaGCGUgaccgugagcccgcUGUCGCgCAGGUAg -3'
miRNA:   3'- -CAGCUGCUUG-CGCA--------------GCAGUG-GUCCGU- -5'
14625 5' -55.8 NC_003521.1 + 164545 0.71 0.779323
Target:  5'- uUCGACGAcCGCGagGUCuCgCAGGCGg -3'
miRNA:   3'- cAGCUGCUuGCGCagCAGuG-GUCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.