miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14627 3' -61.4 NC_003521.1 + 212420 0.66 0.806664
Target:  5'- uGUCggaGGCGUUGaucuggcgaCaCUCGUGCUCGAa -3'
miRNA:   3'- gCAGa--CCGCGACg--------GcGAGCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 209528 0.66 0.806664
Target:  5'- cCGUCgc-CGCUGCCGCgguuaUGCGCcCGGc -3'
miRNA:   3'- -GCAGaccGCGACGGCGa----GCGCGaGCU- -5'
14627 3' -61.4 NC_003521.1 + 181335 0.66 0.805836
Target:  5'- cCGUCUGGUucuguaGCUGCaGCgugauugUCGCGCcCGGa -3'
miRNA:   3'- -GCAGACCG------CGACGgCG-------AGCGCGaGCU- -5'
14627 3' -61.4 NC_003521.1 + 164780 0.66 0.801677
Target:  5'- gCGUCUGGCggcccgcuccgaggaGCUGCCGUcggUGgGCgacCGAg -3'
miRNA:   3'- -GCAGACCG---------------CGACGGCGa--GCgCGa--GCU- -5'
14627 3' -61.4 NC_003521.1 + 8415 0.66 0.798326
Target:  5'- gCG-CUGGCGUugccgUGCCGCagGCGCagccagcgCGAg -3'
miRNA:   3'- -GCaGACCGCG-----ACGGCGagCGCGa-------GCU- -5'
14627 3' -61.4 NC_003521.1 + 62440 0.66 0.798326
Target:  5'- uCGUCUGaGC-CcGCCGCgCGCGCaCGGg -3'
miRNA:   3'- -GCAGAC-CGcGaCGGCGaGCGCGaGCU- -5'
14627 3' -61.4 NC_003521.1 + 43107 0.66 0.789856
Target:  5'- aCGagCUGaccaaGCGCUGCgGCgaGCGCUCGGc -3'
miRNA:   3'- -GCa-GAC-----CGCGACGgCGagCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 98906 0.66 0.789856
Target:  5'- gGUCaGGCgGCUGUagugcgucUGCUCGCGCaCGGc -3'
miRNA:   3'- gCAGaCCG-CGACG--------GCGAGCGCGaGCU- -5'
14627 3' -61.4 NC_003521.1 + 121133 0.66 0.789856
Target:  5'- aCGcCgUGGaGCUGCUG-UCGUGCUCGGa -3'
miRNA:   3'- -GCaG-ACCgCGACGGCgAGCGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 153431 0.66 0.789856
Target:  5'- gGUCa-GCaGCaGCCGgUCGCGCUCGu -3'
miRNA:   3'- gCAGacCG-CGaCGGCgAGCGCGAGCu -5'
14627 3' -61.4 NC_003521.1 + 221766 0.66 0.789002
Target:  5'- gCGUCUGcgccGCGCcGCCGUccUCGaagcuccagcgucCGCUCGAu -3'
miRNA:   3'- -GCAGAC----CGCGaCGGCG--AGC-------------GCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 101366 0.66 0.780396
Target:  5'- gGUCgaguucCGCUGCCGCuacaccuUCGCGCgCGAc -3'
miRNA:   3'- gCAGacc---GCGACGGCG-------AGCGCGaGCU- -5'
14627 3' -61.4 NC_003521.1 + 197577 0.66 0.772551
Target:  5'- uCGggagCUGGCGCUGCUaCUCGCcCUUc- -3'
miRNA:   3'- -GCa---GACCGCGACGGcGAGCGcGAGcu -5'
14627 3' -61.4 NC_003521.1 + 33934 0.66 0.772551
Target:  5'- ---aUGGUGCUGCUGUgcggCGUGCgcggCGAg -3'
miRNA:   3'- gcagACCGCGACGGCGa---GCGCGa---GCU- -5'
14627 3' -61.4 NC_003521.1 + 136881 0.66 0.772551
Target:  5'- gCGggUGGCGCcGgUGUUCGCGgUCGAc -3'
miRNA:   3'- -GCagACCGCGaCgGCGAGCGCgAGCU- -5'
14627 3' -61.4 NC_003521.1 + 59254 0.66 0.772551
Target:  5'- ---gUGGgGCUGCUGCggGCGUUCGu -3'
miRNA:   3'- gcagACCgCGACGGCGagCGCGAGCu -5'
14627 3' -61.4 NC_003521.1 + 144273 0.66 0.771674
Target:  5'- uGUCUgcugggcgagcacGGCgacucgcuGCUGCCGCaCGCGCUgCGGu -3'
miRNA:   3'- gCAGA-------------CCG--------CGACGGCGaGCGCGA-GCU- -5'
14627 3' -61.4 NC_003521.1 + 99010 0.67 0.754807
Target:  5'- --aCUGGUGCUGuuGC---CGCUCGAg -3'
miRNA:   3'- gcaGACCGCGACggCGagcGCGAGCU- -5'
14627 3' -61.4 NC_003521.1 + 28977 0.67 0.754807
Target:  5'- gCGaUCgUGGuCGCUGCCGUaCGCGaaCGAg -3'
miRNA:   3'- -GC-AG-ACC-GCGACGGCGaGCGCgaGCU- -5'
14627 3' -61.4 NC_003521.1 + 32876 0.67 0.740337
Target:  5'- gGUUUGGCGCccgcgccgccggugcUGCCGC-CGUGCcCGc -3'
miRNA:   3'- gCAGACCGCG---------------ACGGCGaGCGCGaGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.