Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14627 | 3' | -61.4 | NC_003521.1 | + | 225891 | 1.08 | 0.001793 |
Target: 5'- gCGUCUGGCGCUGCCGCUCGCGCUCGAa -3' miRNA: 3'- -GCAGACCGCGACGGCGAGCGCGAGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 225581 | 0.79 | 0.168531 |
Target: 5'- uCGUcCUGGCGCUcgGCgGcCUCGCGCUCGGc -3' miRNA: 3'- -GCA-GACCGCGA--CGgC-GAGCGCGAGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 227363 | 0.77 | 0.249705 |
Target: 5'- cCGUCgacGGCGCUaccGCCGCU-GCGCUUGAc -3' miRNA: 3'- -GCAGa--CCGCGA---CGGCGAgCGCGAGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 165989 | 0.75 | 0.297983 |
Target: 5'- gCGUgaGGCGCgggacGCCG-UCGCGCUCGGc -3' miRNA: 3'- -GCAgaCCGCGa----CGGCgAGCGCGAGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 136567 | 0.75 | 0.304502 |
Target: 5'- cCGaCUGGCaGCUGCCGCUgcaccugGUGCUCGAu -3' miRNA: 3'- -GCaGACCG-CGACGGCGAg------CGCGAGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 160377 | 0.74 | 0.353191 |
Target: 5'- uCGUCgUGGCucuCUGCgGCUCGCGUUCGc -3' miRNA: 3'- -GCAG-ACCGc--GACGgCGAGCGCGAGCu -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 197851 | 0.74 | 0.331671 |
Target: 5'- uCGUCggugGGCGCcgGCgGgUCGCGCUCGc -3' miRNA: 3'- -GCAGa---CCGCGa-CGgCgAGCGCGAGCu -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 185077 | 0.73 | 0.407133 |
Target: 5'- gCGcCUGuCGCUGCCGCccgCGCGCUgGGa -3' miRNA: 3'- -GCaGACcGCGACGGCGa--GCGCGAgCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 223780 | 0.73 | 0.407133 |
Target: 5'- gCGcugCUGGUGCUGCCGUugUCGuCGCUCc- -3' miRNA: 3'- -GCa--GACCGCGACGGCG--AGC-GCGAGcu -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 86692 | 0.72 | 0.457276 |
Target: 5'- aCG-CUGGCGCUGCCGCccUUGCccgGCcgCGAg -3' miRNA: 3'- -GCaGACCGCGACGGCG--AGCG---CGa-GCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 206309 | 0.72 | 0.457276 |
Target: 5'- gCGUCUcGGCccGCgGCCGCUaccUGCGCUCGc -3' miRNA: 3'- -GCAGA-CCG--CGaCGGCGA---GCGCGAGCu -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 152401 | 0.71 | 0.492479 |
Target: 5'- -aUCUGGCGgUGCCGCgccuucUCGCgguugcagaugaGCUCGAc -3' miRNA: 3'- gcAGACCGCgACGGCG------AGCG------------CGAGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 156620 | 0.71 | 0.472077 |
Target: 5'- gCGcCUGGUGCUGCgcgaCGCccugggcuuccucuUCGUGCUCGAc -3' miRNA: 3'- -GCaGACCGCGACG----GCG--------------AGCGCGAGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 95094 | 0.71 | 0.501475 |
Target: 5'- -cUCgGGCGCcuugagcgGCCGCgCGCGCUUGAg -3' miRNA: 3'- gcAGaCCGCGa-------CGGCGaGCGCGAGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 53465 | 0.71 | 0.528879 |
Target: 5'- uCGUCgGGaUGCUGCUGCUCGaGCcCGAa -3' miRNA: 3'- -GCAGaCC-GCGACGGCGAGCgCGaGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 56137 | 0.7 | 0.575675 |
Target: 5'- aCGUCgGGCGagUGCgGCUCGUGCUg-- -3' miRNA: 3'- -GCAGaCCGCg-ACGgCGAGCGCGAgcu -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 225756 | 0.7 | 0.575675 |
Target: 5'- aGUgCUGuuGCagcacgcGCCGCUCGCGCUCGc -3' miRNA: 3'- gCA-GACcgCGa------CGGCGAGCGCGAGCu -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 105610 | 0.7 | 0.538137 |
Target: 5'- cCGcUCaGGCGCUGCaGCagggCGUGCUCGGg -3' miRNA: 3'- -GC-AGaCCGCGACGgCGa---GCGCGAGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 195856 | 0.7 | 0.538137 |
Target: 5'- gCGUCa-GCGCUGUCGcCUCGCuCUCGGg -3' miRNA: 3'- -GCAGacCGCGACGGC-GAGCGcGAGCU- -5' |
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14627 | 3' | -61.4 | NC_003521.1 | + | 165939 | 0.7 | 0.538137 |
Target: 5'- cCGUCUcGCGCagcagcGCCGUgUCGUGCUCGGg -3' miRNA: 3'- -GCAGAcCGCGa-----CGGCG-AGCGCGAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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