miRNA display CGI


Results 41 - 60 of 91 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14628 3' -56.4 NC_003521.1 + 235990 0.68 0.840153
Target:  5'- cCGCACUGCaAGC-GCguucGCACGGg--UCa -3'
miRNA:   3'- -GCGUGACG-UCGaCGa---CGUGCCagaAG- -5'
14628 3' -56.4 NC_003521.1 + 180921 0.68 0.855826
Target:  5'- uGUACUGCGGCcGCUcgauggugGCGCGGUg--- -3'
miRNA:   3'- gCGUGACGUCGaCGA--------CGUGCCAgaag -5'
14628 3' -56.4 NC_003521.1 + 150685 0.68 0.877851
Target:  5'- cCGCuGCUGCuggguGCUGCUGCGcCGG-CggCg -3'
miRNA:   3'- -GCG-UGACGu----CGACGACGU-GCCaGaaG- -5'
14628 3' -56.4 NC_003521.1 + 30238 0.68 0.877851
Target:  5'- uCGCGCUGCAGgU-CcGCGCGGUUg-- -3'
miRNA:   3'- -GCGUGACGUCgAcGaCGUGCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 13264 0.68 0.877851
Target:  5'- uCGCugUGUAGCUGUaugGUgggugACGGcgUCUUCa -3'
miRNA:   3'- -GCGugACGUCGACGa--CG-----UGCC--AGAAG- -5'
14628 3' -56.4 NC_003521.1 + 183767 0.68 0.863371
Target:  5'- uCGcCGCUGCuaCUGCUGCgACGGUCc-- -3'
miRNA:   3'- -GC-GUGACGucGACGACG-UGCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 141284 0.68 0.863371
Target:  5'- gGCACcuaCcGCUGCgGCACGGUCUcCg -3'
miRNA:   3'- gCGUGac-GuCGACGaCGUGCCAGAaG- -5'
14628 3' -56.4 NC_003521.1 + 19893 0.68 0.877851
Target:  5'- gGCGCUGauccuGCUGCUGUuccUGGUgUUCu -3'
miRNA:   3'- gCGUGACgu---CGACGACGu--GCCAgAAG- -5'
14628 3' -56.4 NC_003521.1 + 214636 0.68 0.877851
Target:  5'- uGUGCUGCAGCgagcgGCUGCGCuucGUUggCa -3'
miRNA:   3'- gCGUGACGUCGa----CGACGUGc--CAGaaG- -5'
14628 3' -56.4 NC_003521.1 + 6147 0.68 0.877851
Target:  5'- aCGUACUGCAGCcaaugcgccggcUccggcuccugGCUGUugGGUCcgUCg -3'
miRNA:   3'- -GCGUGACGUCG------------A----------CGACGugCCAGa-AG- -5'
14628 3' -56.4 NC_003521.1 + 183546 0.68 0.877851
Target:  5'- gCGCACcGac-CUGCUGCugGGUCg-- -3'
miRNA:   3'- -GCGUGaCgucGACGACGugCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 142295 0.68 0.855826
Target:  5'- cCGcCGCUGCAGCggcccaGCcGCGCGcGUCgUCg -3'
miRNA:   3'- -GC-GUGACGUCGa-----CGaCGUGC-CAGaAG- -5'
14628 3' -56.4 NC_003521.1 + 103074 0.69 0.832039
Target:  5'- uGCGCggGCgagGGCUGCUGCugGGg---- -3'
miRNA:   3'- gCGUGa-CG---UCGACGACGugCCagaag -5'
14628 3' -56.4 NC_003521.1 + 29258 0.69 0.832039
Target:  5'- cCGCGagcgUGCGGCgcuacugGCUGUACGGUUaUCc -3'
miRNA:   3'- -GCGUg---ACGUCGa------CGACGUGCCAGaAG- -5'
14628 3' -56.4 NC_003521.1 + 104159 0.69 0.823749
Target:  5'- uGCuCUGCGGCgGCgGCGCGGg--UCg -3'
miRNA:   3'- gCGuGACGUCGaCGaCGUGCCagaAG- -5'
14628 3' -56.4 NC_003521.1 + 115949 0.69 0.81529
Target:  5'- aCGCGCUGUGcCUGCUGCcgcCGcUCUUCa -3'
miRNA:   3'- -GCGUGACGUcGACGACGu--GCcAGAAG- -5'
14628 3' -56.4 NC_003521.1 + 99235 0.69 0.797897
Target:  5'- aGgGCUGUAGCUGacggUGCGCGcGUCgUCg -3'
miRNA:   3'- gCgUGACGUCGACg---ACGUGC-CAGaAG- -5'
14628 3' -56.4 NC_003521.1 + 6682 0.69 0.797897
Target:  5'- uCGUGCUGCAgggccugcgcccGCgagcGCUGCugGGUCUc- -3'
miRNA:   3'- -GCGUGACGU------------CGa---CGACGugCCAGAag -5'
14628 3' -56.4 NC_003521.1 + 122686 0.69 0.823749
Target:  5'- aGCACcGaCAGCUGCgggGC-CGGUCg-- -3'
miRNA:   3'- gCGUGaC-GUCGACGa--CGuGCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 160772 0.69 0.81529
Target:  5'- uCGCGCgugccgccgGCGGCacGCggGCGCGgGUCUUCg -3'
miRNA:   3'- -GCGUGa--------CGUCGa-CGa-CGUGC-CAGAAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.