Results 21 - 40 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14628 | 3' | -56.4 | NC_003521.1 | + | 76518 | 0.67 | 0.916078 |
Target: 5'- uGCuGCUGCuguuguuguGGCUGCUGCuGCGGUg--- -3' miRNA: 3'- gCG-UGACG---------UCGACGACG-UGCCAgaag -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 140847 | 0.67 | 0.904233 |
Target: 5'- aCGUGCUGgAGC-GCUuCGCGGUCUc- -3' miRNA: 3'- -GCGUGACgUCGaCGAcGUGCCAGAag -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 136046 | 0.67 | 0.901755 |
Target: 5'- aCGCACcugugcgaccuggGCAGCgGCUGCGCGcUCaUCu -3' miRNA: 3'- -GCGUGa------------CGUCGaCGACGUGCcAGaAG- -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 103007 | 0.67 | 0.891483 |
Target: 5'- aGCGCcuuaauaaUGCAGCUGCgcucguccGCcCGGUCUa- -3' miRNA: 3'- gCGUG--------ACGUCGACGa-------CGuGCCAGAag -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 42651 | 0.67 | 0.91027 |
Target: 5'- cCGCGgUGUAGgcguacguCUGCUGCACGGg---- -3' miRNA: 3'- -GCGUgACGUC--------GACGACGUGCCagaag -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 19660 | 0.67 | 0.89797 |
Target: 5'- uGC-CUGgGGCUGCUGCGCuGGg---- -3' miRNA: 3'- gCGuGACgUCGACGACGUG-CCagaag -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 179600 | 0.67 | 0.891483 |
Target: 5'- uGCagGCUGCcgcuGCUGCUGCGCGugauGUCg-- -3' miRNA: 3'- gCG--UGACGu---CGACGACGUGC----CAGaag -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 17586 | 0.67 | 0.904233 |
Target: 5'- gCGCAC-GCucucGCUGCUGCAgGGgcUCUa- -3' miRNA: 3'- -GCGUGaCGu---CGACGACGUgCC--AGAag -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 48011 | 0.67 | 0.904233 |
Target: 5'- gGCuuCUGCGGCUGCUGCcaGCGaUCc-- -3' miRNA: 3'- gCGu-GACGUCGACGACG--UGCcAGaag -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 153201 | 0.67 | 0.91262 |
Target: 5'- gGC-CUGCGGCggcaccUGCUGCcacaccugcuacaacACGGcCUUCg -3' miRNA: 3'- gCGuGACGUCG------ACGACG---------------UGCCaGAAG- -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 54968 | 0.67 | 0.914934 |
Target: 5'- gCGCACggaugacagaucGCAGCUGCUGgAUGGcCg-- -3' miRNA: 3'- -GCGUGa-----------CGUCGACGACgUGCCaGaag -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 74338 | 0.67 | 0.916078 |
Target: 5'- gCGCcccGCUGgAuggcGCUGCUGCGCGG-CUa- -3' miRNA: 3'- -GCG---UGACgU----CGACGACGUGCCaGAag -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 21343 | 0.67 | 0.904233 |
Target: 5'- cCGUGCUGCucAGCgcGCUGCuAUGGUCg-- -3' miRNA: 3'- -GCGUGACG--UCGa-CGACG-UGCCAGaag -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 85236 | 0.67 | 0.915507 |
Target: 5'- uGCuGCUGCucucguuGCUGCUGCAccaccuccugcgcCGGUCg-- -3' miRNA: 3'- gCG-UGACGu------CGACGACGU-------------GCCAGaag -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 150685 | 0.68 | 0.877851 |
Target: 5'- cCGCuGCUGCuggguGCUGCUGCGcCGG-CggCg -3' miRNA: 3'- -GCG-UGACGu----CGACGACGU-GCCaGaaG- -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 19893 | 0.68 | 0.877851 |
Target: 5'- gGCGCUGauccuGCUGCUGUuccUGGUgUUCu -3' miRNA: 3'- gCGUGACgu---CGACGACGu--GCCAgAAG- -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 235990 | 0.68 | 0.840153 |
Target: 5'- cCGCACUGCaAGC-GCguucGCACGGg--UCa -3' miRNA: 3'- -GCGUGACG-UCGaCGa---CGUGCCagaAG- -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 141284 | 0.68 | 0.863371 |
Target: 5'- gGCACcuaCcGCUGCgGCACGGUCUcCg -3' miRNA: 3'- gCGUGac-GuCGACGaCGUGCCAGAaG- -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 185107 | 0.68 | 0.863371 |
Target: 5'- gGCGCUGCGcgccgacauGCUGgaGCACGGg---- -3' miRNA: 3'- gCGUGACGU---------CGACgaCGUGCCagaag -5' |
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14628 | 3' | -56.4 | NC_003521.1 | + | 179672 | 0.68 | 0.870715 |
Target: 5'- gGgACUGCAGCaugaGCUGCACcagcaGGUCg-- -3' miRNA: 3'- gCgUGACGUCGa---CGACGUG-----CCAGaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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