miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14628 3' -56.4 NC_003521.1 + 49152 0.69 0.80667
Target:  5'- uGCGauugucGCGGCUGCUGCugGGgCUg- -3'
miRNA:   3'- gCGUga----CGUCGACGACGugCCaGAag -5'
14628 3' -56.4 NC_003521.1 + 54968 0.67 0.914934
Target:  5'- gCGCACggaugacagaucGCAGCUGCUGgAUGGcCg-- -3'
miRNA:   3'- -GCGUGa-----------CGUCGACGACgUGCCaGaag -5'
14628 3' -56.4 NC_003521.1 + 55747 0.66 0.927002
Target:  5'- gCGCGCggGCGGCaGCgacagGCGCGGcCggCg -3'
miRNA:   3'- -GCGUGa-CGUCGaCGa----CGUGCCaGaaG- -5'
14628 3' -56.4 NC_003521.1 + 56498 0.7 0.761437
Target:  5'- aGUACUGCGGCUGacgGCcGCGGUagcgUUUCa -3'
miRNA:   3'- gCGUGACGUCGACga-CG-UGCCA----GAAG- -5'
14628 3' -56.4 NC_003521.1 + 60773 0.67 0.91027
Target:  5'- gCGaCAgUGCGGCaUGCUGCggcuuuccgACGGUCccgUCu -3'
miRNA:   3'- -GC-GUgACGUCG-ACGACG---------UGCCAGa--AG- -5'
14628 3' -56.4 NC_003521.1 + 70664 0.77 0.380843
Target:  5'- gGUGCUGCAGCUGCUGCugGaaaaccgacggcGUCUg- -3'
miRNA:   3'- gCGUGACGUCGACGACGugC------------CAGAag -5'
14628 3' -56.4 NC_003521.1 + 74338 0.67 0.916078
Target:  5'- gCGCcccGCUGgAuggcGCUGCUGCGCGG-CUa- -3'
miRNA:   3'- -GCG---UGACgU----CGACGACGUGCCaGAag -5'
14628 3' -56.4 NC_003521.1 + 76283 0.67 0.89797
Target:  5'- aGuCGCUGCcGCUGCUGCGaguccgGGUCc-- -3'
miRNA:   3'- gC-GUGACGuCGACGACGUg-----CCAGaag -5'
14628 3' -56.4 NC_003521.1 + 76518 0.67 0.916078
Target:  5'- uGCuGCUGCuguuguuguGGCUGCUGCuGCGGUg--- -3'
miRNA:   3'- gCG-UGACG---------UCGACGACG-UGCCAgaag -5'
14628 3' -56.4 NC_003521.1 + 85236 0.67 0.915507
Target:  5'- uGCuGCUGCucucguuGCUGCUGCAccaccuccugcgcCGGUCg-- -3'
miRNA:   3'- gCG-UGACGu------CGACGACGU-------------GCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 86099 0.7 0.77074
Target:  5'- uCGUugauCUGCAGCcGCUGgAUGGUgUUCu -3'
miRNA:   3'- -GCGu---GACGUCGaCGACgUGCCAgAAG- -5'
14628 3' -56.4 NC_003521.1 + 86759 0.86 0.117805
Target:  5'- aGCuuuCUGCGGCUGCUGCACGG-CUUUa -3'
miRNA:   3'- gCGu--GACGUCGACGACGUGCCaGAAG- -5'
14628 3' -56.4 NC_003521.1 + 88686 0.7 0.788978
Target:  5'- cCGCGCcGaa-CUGCUGCACGGgaccagCUUCg -3'
miRNA:   3'- -GCGUGaCgucGACGACGUGCCa-----GAAG- -5'
14628 3' -56.4 NC_003521.1 + 91001 0.7 0.77074
Target:  5'- uGCugUuGCAGCUGCaGCA-GGUCggUCa -3'
miRNA:   3'- gCGugA-CGUCGACGaCGUgCCAGa-AG- -5'
14628 3' -56.4 NC_003521.1 + 92226 0.7 0.742507
Target:  5'- aGCGCUGUgagggcccgacgGGC-GCcGCGCGGUCUUUu -3'
miRNA:   3'- gCGUGACG------------UCGaCGaCGUGCCAGAAG- -5'
14628 3' -56.4 NC_003521.1 + 98821 0.71 0.683755
Target:  5'- gGCGUUGCAGCUGCUugGCGCGGg---- -3'
miRNA:   3'- gCGUGACGUCGACGA--CGUGCCagaag -5'
14628 3' -56.4 NC_003521.1 + 99235 0.69 0.797897
Target:  5'- aGgGCUGUAGCUGacggUGCGCGcGUCgUCg -3'
miRNA:   3'- gCgUGACGUCGACg---ACGUGC-CAGaAG- -5'
14628 3' -56.4 NC_003521.1 + 101141 0.67 0.91027
Target:  5'- gGCAC-GCGGaaaGCgcgGCGCGGUCUg- -3'
miRNA:   3'- gCGUGaCGUCga-CGa--CGUGCCAGAag -5'
14628 3' -56.4 NC_003521.1 + 101772 0.66 0.932117
Target:  5'- gGUGgUGCAGCagGUUGCGCaGGUCa-- -3'
miRNA:   3'- gCGUgACGUCGa-CGACGUG-CCAGaag -5'
14628 3' -56.4 NC_003521.1 + 103007 0.67 0.891483
Target:  5'- aGCGCcuuaauaaUGCAGCUGCgcucguccGCcCGGUCUa- -3'
miRNA:   3'- gCGUG--------ACGUCGACGa-------CGuGCCAGAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.