miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14628 3' -56.4 NC_003521.1 + 6147 0.68 0.877851
Target:  5'- aCGUACUGCAGCcaaugcgccggcUccggcuccugGCUGUugGGUCcgUCg -3'
miRNA:   3'- -GCGUGACGUCG------------A----------CGACGugCCAGa-AG- -5'
14628 3' -56.4 NC_003521.1 + 6682 0.69 0.797897
Target:  5'- uCGUGCUGCAgggccugcgcccGCgagcGCUGCugGGUCUc- -3'
miRNA:   3'- -GCGUGACGU------------CGa---CGACGugCCAGAag -5'
14628 3' -56.4 NC_003521.1 + 11815 0.7 0.788978
Target:  5'- gGUGCUGCAGUacucuagcuccgUGCUGC-CGGUCc-- -3'
miRNA:   3'- gCGUGACGUCG------------ACGACGuGCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 12256 0.69 0.81529
Target:  5'- -uCGCUGCcgAGCUGCaguccggugaacUGCACGGUCg-- -3'
miRNA:   3'- gcGUGACG--UCGACG------------ACGUGCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 13264 0.68 0.877851
Target:  5'- uCGCugUGUAGCUGUaugGUgggugACGGcgUCUUCa -3'
miRNA:   3'- -GCGugACGUCGACGa--CG-----UGCC--AGAAG- -5'
14628 3' -56.4 NC_003521.1 + 14788 0.68 0.840153
Target:  5'- gGUGCUGguGCUGCUGgACuGGUUc-- -3'
miRNA:   3'- gCGUGACguCGACGACgUG-CCAGaag -5'
14628 3' -56.4 NC_003521.1 + 17586 0.67 0.904233
Target:  5'- gCGCAC-GCucucGCUGCUGCAgGGgcUCUa- -3'
miRNA:   3'- -GCGUGaCGu---CGACGACGUgCC--AGAag -5'
14628 3' -56.4 NC_003521.1 + 19660 0.67 0.89797
Target:  5'- uGC-CUGgGGCUGCUGCGCuGGg---- -3'
miRNA:   3'- gCGuGACgUCGACGACGUG-CCagaag -5'
14628 3' -56.4 NC_003521.1 + 19893 0.68 0.877851
Target:  5'- gGCGCUGauccuGCUGCUGUuccUGGUgUUCu -3'
miRNA:   3'- gCGUGACgu---CGACGACGu--GCCAgAAG- -5'
14628 3' -56.4 NC_003521.1 + 21286 0.68 0.848084
Target:  5'- aGCGCUucGCGGUcugGCUGCgcgugGCGGUCaUCg -3'
miRNA:   3'- gCGUGA--CGUCGa--CGACG-----UGCCAGaAG- -5'
14628 3' -56.4 NC_003521.1 + 21343 0.67 0.904233
Target:  5'- cCGUGCUGCucAGCgcGCUGCuAUGGUCg-- -3'
miRNA:   3'- -GCGUGACG--UCGa-CGACG-UGCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 26163 0.71 0.6937
Target:  5'- aCGgACUGCuGCUGCUGgagacggccauCACGGugcUCUUCa -3'
miRNA:   3'- -GCgUGACGuCGACGAC-----------GUGCC---AGAAG- -5'
14628 3' -56.4 NC_003521.1 + 26249 0.66 0.937
Target:  5'- gCGCACggaacGCcagcGCUGCUGCAccaccaggcacCGGUCUc- -3'
miRNA:   3'- -GCGUGa----CGu---CGACGACGU-----------GCCAGAag -5'
14628 3' -56.4 NC_003521.1 + 26565 0.71 0.732897
Target:  5'- aGCugaUGCAcaagauGCUGCUGUgccucuacACGGUCUUCg -3'
miRNA:   3'- gCGug-ACGU------CGACGACG--------UGCCAGAAG- -5'
14628 3' -56.4 NC_003521.1 + 28852 0.77 0.405736
Target:  5'- aCGaGCUGCGGCgGCgcgGCACGGUCgagUCg -3'
miRNA:   3'- -GCgUGACGUCGaCGa--CGUGCCAGa--AG- -5'
14628 3' -56.4 NC_003521.1 + 29258 0.69 0.832039
Target:  5'- cCGCGagcgUGCGGCgcuacugGCUGUACGGUUaUCc -3'
miRNA:   3'- -GCGUg---ACGUCGa------CGACGUGCCAGaAG- -5'
14628 3' -56.4 NC_003521.1 + 30238 0.68 0.877851
Target:  5'- uCGCGCUGCAGgU-CcGCGCGGUUg-- -3'
miRNA:   3'- -GCGUGACGUCgAcGaCGUGCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 38998 0.66 0.937
Target:  5'- gGCGCUGguGgauguggcGCUGCACGGcCgUCa -3'
miRNA:   3'- gCGUGACguCga------CGACGUGCCaGaAG- -5'
14628 3' -56.4 NC_003521.1 + 42651 0.67 0.91027
Target:  5'- cCGCGgUGUAGgcguacguCUGCUGCACGGg---- -3'
miRNA:   3'- -GCGUgACGUC--------GACGACGUGCCagaag -5'
14628 3' -56.4 NC_003521.1 + 48011 0.67 0.904233
Target:  5'- gGCuuCUGCGGCUGCUGCcaGCGaUCc-- -3'
miRNA:   3'- gCGu-GACGUCGACGACG--UGCcAGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.