miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14628 3' -56.4 NC_003521.1 + 239226 0.66 0.937
Target:  5'- gGCGCUGguGgauguggcGCUGCACGGcCgUCa -3'
miRNA:   3'- gCGUGACguCga------CGACGUGCCaGaAG- -5'
14628 3' -56.4 NC_003521.1 + 235990 0.68 0.840153
Target:  5'- cCGCACUGCaAGC-GCguucGCACGGg--UCa -3'
miRNA:   3'- -GCGUGACG-UCGaCGa---CGUGCCagaAG- -5'
14628 3' -56.4 NC_003521.1 + 226193 1.11 0.00271
Target:  5'- aCGCACUGCAGCUGCUGCACGGUCUUCa -3'
miRNA:   3'- -GCGUGACGUCGACGACGUGCCAGAAG- -5'
14628 3' -56.4 NC_003521.1 + 223843 0.72 0.663749
Target:  5'- uGCuguccCUGCGGCUGCUGCuGCGG-CUg- -3'
miRNA:   3'- gCGu----GACGUCGACGACG-UGCCaGAag -5'
14628 3' -56.4 NC_003521.1 + 223779 0.66 0.921655
Target:  5'- gGCGCUGCuGgUGCUGC-CGuuGUCgUCg -3'
miRNA:   3'- gCGUGACGuCgACGACGuGC--CAGaAG- -5'
14628 3' -56.4 NC_003521.1 + 214636 0.68 0.877851
Target:  5'- uGUGCUGCAGCgagcgGCUGCGCuucGUUggCa -3'
miRNA:   3'- gCGUGACGUCGa----CGACGUGc--CAGaaG- -5'
14628 3' -56.4 NC_003521.1 + 210506 0.72 0.653705
Target:  5'- gGCGCaGUuGCUGgaGCGCGGUCUg- -3'
miRNA:   3'- gCGUGaCGuCGACgaCGUGCCAGAag -5'
14628 3' -56.4 NC_003521.1 + 207547 0.73 0.603389
Target:  5'- aGCuCUcGCAGCUGCUGCACGaUCg-- -3'
miRNA:   3'- gCGuGA-CGUCGACGACGUGCcAGaag -5'
14628 3' -56.4 NC_003521.1 + 198029 0.72 0.643644
Target:  5'- gGCGCgUGCAGCcgccggGCUGCACGGgcaggugCUUg -3'
miRNA:   3'- gCGUG-ACGUCGa-----CGACGUGCCa------GAAg -5'
14628 3' -56.4 NC_003521.1 + 185107 0.68 0.863371
Target:  5'- gGCGCUGCGcgccgacauGCUGgaGCACGGg---- -3'
miRNA:   3'- gCGUGACGU---------CGACgaCGUGCCagaag -5'
14628 3' -56.4 NC_003521.1 + 183767 0.68 0.863371
Target:  5'- uCGcCGCUGCuaCUGCUGCgACGGUCc-- -3'
miRNA:   3'- -GC-GUGACGucGACGACG-UGCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 183546 0.68 0.877851
Target:  5'- gCGCACcGac-CUGCUGCugGGUCg-- -3'
miRNA:   3'- -GCGUGaCgucGACGACGugCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 180921 0.68 0.855826
Target:  5'- uGUACUGCGGCcGCUcgauggugGCGCGGUg--- -3'
miRNA:   3'- gCGUGACGUCGaCGA--------CGUGCCAgaag -5'
14628 3' -56.4 NC_003521.1 + 180822 0.7 0.761437
Target:  5'- uCGCGCUGCuGCagGCUGC-CGGUg--- -3'
miRNA:   3'- -GCGUGACGuCGa-CGACGuGCCAgaag -5'
14628 3' -56.4 NC_003521.1 + 179672 0.68 0.870715
Target:  5'- gGgACUGCAGCaugaGCUGCACcagcaGGUCg-- -3'
miRNA:   3'- gCgUGACGUCGa---CGACGUG-----CCAGaag -5'
14628 3' -56.4 NC_003521.1 + 179600 0.67 0.891483
Target:  5'- uGCagGCUGCcgcuGCUGCUGCGCGugauGUCg-- -3'
miRNA:   3'- gCG--UGACGu---CGACGACGUGC----CAGaag -5'
14628 3' -56.4 NC_003521.1 + 177746 0.68 0.840153
Target:  5'- gCGCGCcggcGCAGCUGUacgggGuCGCGGUCgUCg -3'
miRNA:   3'- -GCGUGa---CGUCGACGa----C-GUGCCAGaAG- -5'
14628 3' -56.4 NC_003521.1 + 177535 0.7 0.761437
Target:  5'- gGCGuggauCaGCAGCUGCUGCAccCGGUCg-- -3'
miRNA:   3'- gCGU-----GaCGUCGACGACGU--GCCAGaag -5'
14628 3' -56.4 NC_003521.1 + 175231 0.66 0.932117
Target:  5'- uGCugUuGCAGCUGUUGCugucccugGCGGUa--- -3'
miRNA:   3'- gCGugA-CGUCGACGACG--------UGCCAgaag -5'
14628 3' -56.4 NC_003521.1 + 173704 0.7 0.77074
Target:  5'- cCGCuGCUGUuGCUGCUGCugGGa---- -3'
miRNA:   3'- -GCG-UGACGuCGACGACGugCCagaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.